Hb_002301_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig2301: 30841-34303
Sequence    

Annotation

kegg
ID rcu:RCOM_1673050
description NAC domain-containing protein 21/22, putative
nr
ID AHF27222.1
description NAC transcription factor [Hevea brasiliensis]
swissprot
ID F4HY61
description NAC domain-containing protein 10 OS=Arabidopsis thaliana GN=NAC010 PE=2 SV=1
trembl
ID A0A059SWK2
description NAC transcription factor OS=Hevea brasiliensis GN=NAC1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24104: 31004-34321 , PASA_asmbl_24105: 31148-34237 , PASA_asmbl_24106: 31148-34328 , PASA_asmbl_24107: 30962-34298
cDNA
(Sanger)
(ID:Location)		 005_D13.ab1: 31820-34321 , 012_G17.ab1: 31547-34300 , 051_P06.ab1: 31628-34328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_020 0.0 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
2 Hb_000155_070 0.0976832503 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
3 Hb_000442_030 0.1031962946 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000563_540 0.1082028267 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
5 Hb_005488_100 0.1096300994 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
6 Hb_000571_070 0.110684279 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
7 Hb_010931_100 0.1156165578 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
8 Hb_000907_100 0.1156795623 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
9 Hb_027751_020 0.1243290072 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
10 Hb_003327_060 0.1254146445 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
11 Hb_000264_190 0.1274754323 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
12 Hb_005730_020 0.1302511753 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
13 Hb_004545_150 0.1318103925 - - PREDICTED: paramyosin [Jatropha curcas]
14 Hb_002609_260 0.1329662216 - - CCCH-type zinc finger protein [Hevea brasiliensis]
15 Hb_001017_090 0.1332027343 - - -
16 Hb_001476_100 0.1343081567 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000849_040 0.1343808563 - - transcription factor, putative [Ricinus communis]
18 Hb_134789_010 0.1369954313 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
19 Hb_006787_040 0.1373772977 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_001425_120 0.1393943369 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_020 Hb_002301_020 Hb_000155_070 Hb_000155_070 Hb_002301_020--Hb_000155_070 Hb_000442_030 Hb_000442_030 Hb_002301_020--Hb_000442_030 Hb_000563_540 Hb_000563_540 Hb_002301_020--Hb_000563_540 Hb_005488_100 Hb_005488_100 Hb_002301_020--Hb_005488_100 Hb_000571_070 Hb_000571_070 Hb_002301_020--Hb_000571_070 Hb_010931_100 Hb_010931_100 Hb_002301_020--Hb_010931_100 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_003627_020 Hb_003627_020 Hb_000155_070--Hb_003627_020 Hb_000907_100 Hb_000907_100 Hb_000155_070--Hb_000907_100 Hb_004126_010 Hb_004126_010 Hb_000155_070--Hb_004126_010 Hb_000849_040 Hb_000849_040 Hb_000442_030--Hb_000849_040 Hb_006787_040 Hb_006787_040 Hb_000442_030--Hb_006787_040 Hb_024505_040 Hb_024505_040 Hb_000442_030--Hb_024505_040 Hb_000387_080 Hb_000387_080 Hb_000442_030--Hb_000387_080 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090 Hb_000264_190 Hb_000264_190 Hb_000563_540--Hb_000264_190 Hb_000563_540--Hb_010931_100 Hb_027751_020 Hb_027751_020 Hb_000563_540--Hb_027751_020 Hb_002609_260 Hb_002609_260 Hb_000563_540--Hb_002609_260 Hb_005730_020 Hb_005730_020 Hb_000563_540--Hb_005730_020 Hb_000563_540--Hb_000571_070 Hb_005488_100--Hb_010931_100 Hb_002067_160 Hb_002067_160 Hb_005488_100--Hb_002067_160 Hb_005488_100--Hb_002609_260 Hb_007178_010 Hb_007178_010 Hb_005488_100--Hb_007178_010 Hb_005488_100--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_005488_100--Hb_002232_180 Hb_000571_070--Hb_027751_020 Hb_000571_070--Hb_000264_190 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_000571_070--Hb_010931_100 Hb_010931_100--Hb_000264_190 Hb_010931_100--Hb_002609_260 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_027751_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
834.368 3.81578 1.16922 20.4879 466.986 1070.83
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
691.183 369.813 646.705 74.9793 9.31279

CAGE analysis