Hb_002301_060

Information

Type -
Description -
Location Contig2301: 68985-70412
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05680g
description pentatricopeptide repeat-containing family protein
nr
ID KDP21012.1
description hypothetical protein JCGZ_21483 [Jatropha curcas]
swissprot
ID Q9FNL2
description Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
trembl
ID A0A067JB68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_060 0.0 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
2 Hb_000125_100 0.0951412557 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
3 Hb_001488_070 0.0954882553 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009265_070 0.1001810493 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
5 Hb_002813_040 0.1014405529 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
6 Hb_003671_020 0.1073901973 - - calcineurin B, putative [Ricinus communis]
7 Hb_008226_060 0.1074061881 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
8 Hb_000988_080 0.1074520997 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_040575_010 0.1086304482 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
10 Hb_001322_150 0.1091440661 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
11 Hb_005686_060 0.1122786383 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
12 Hb_085863_030 0.1128988473 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
13 Hb_009178_030 0.1143148822 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002701_020 0.1153639194 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_000866_220 0.1175979898 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
16 Hb_000690_180 0.118409387 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
17 Hb_003389_040 0.121615664 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
18 Hb_002182_080 0.1221678013 - - 3-5 exonuclease, putative [Ricinus communis]
19 Hb_000056_210 0.1223348435 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
20 Hb_001048_020 0.1228932042 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_060 Hb_002301_060 Hb_000125_100 Hb_000125_100 Hb_002301_060--Hb_000125_100 Hb_001488_070 Hb_001488_070 Hb_002301_060--Hb_001488_070 Hb_009265_070 Hb_009265_070 Hb_002301_060--Hb_009265_070 Hb_002813_040 Hb_002813_040 Hb_002301_060--Hb_002813_040 Hb_003671_020 Hb_003671_020 Hb_002301_060--Hb_003671_020 Hb_008226_060 Hb_008226_060 Hb_002301_060--Hb_008226_060 Hb_000125_100--Hb_003671_020 Hb_092337_010 Hb_092337_010 Hb_000125_100--Hb_092337_010 Hb_003414_050 Hb_003414_050 Hb_000125_100--Hb_003414_050 Hb_001205_150 Hb_001205_150 Hb_000125_100--Hb_001205_150 Hb_009615_070 Hb_009615_070 Hb_000125_100--Hb_009615_070 Hb_000629_120 Hb_000629_120 Hb_000125_100--Hb_000629_120 Hb_001488_070--Hb_002813_040 Hb_000512_060 Hb_000512_060 Hb_001488_070--Hb_000512_060 Hb_000175_460 Hb_000175_460 Hb_001488_070--Hb_000175_460 Hb_031527_040 Hb_031527_040 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_000510_320 Hb_000510_320 Hb_001488_070--Hb_000510_320 Hb_002701_020 Hb_002701_020 Hb_009265_070--Hb_002701_020 Hb_000988_080 Hb_000988_080 Hb_009265_070--Hb_000988_080 Hb_000690_180 Hb_000690_180 Hb_009265_070--Hb_000690_180 Hb_004545_060 Hb_004545_060 Hb_009265_070--Hb_004545_060 Hb_003055_120 Hb_003055_120 Hb_009265_070--Hb_003055_120 Hb_004032_010 Hb_004032_010 Hb_009265_070--Hb_004032_010 Hb_003581_070 Hb_003581_070 Hb_002813_040--Hb_003581_070 Hb_029866_090 Hb_029866_090 Hb_002813_040--Hb_029866_090 Hb_002813_040--Hb_031527_040 Hb_002256_030 Hb_002256_030 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_003671_020--Hb_003414_050 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_003389_040 Hb_003389_040 Hb_008226_060--Hb_003389_040 Hb_007101_300 Hb_007101_300 Hb_008226_060--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_008226_060--Hb_000032_380 Hb_002205_110 Hb_002205_110 Hb_008226_060--Hb_002205_110 Hb_010997_080 Hb_010997_080 Hb_008226_060--Hb_010997_080 Hb_000417_040 Hb_000417_040 Hb_008226_060--Hb_000417_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.697915 0.659073 0.396521 0.66583 0.364559 1.02506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.495835 1.43028 1.07279 0.436272 0.217154

CAGE analysis