Hb_002301_080

Information

Type transcription factor
Description TF Family: HB
Location Contig2301: 76837-89295
Sequence    

Annotation

kegg
ID rcu:RCOM_1673230
description homeobox protein, putative
nr
ID XP_012091669.1
description PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21481 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeodomain-like transcriptional isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24113: 77041-77723 , PASA_asmbl_24114: 77899-78112 , PASA_asmbl_24115: 80106-80394 , PASA_asmbl_24116: 81028-89053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_080 0.0 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
2 Hb_116929_010 0.0615388015 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
3 Hb_003044_020 0.0632804737 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
4 Hb_117552_010 0.0681426991 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_133047_010 0.0684534186 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_002400_240 0.0688075673 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_000320_200 0.070001167 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
8 Hb_006252_020 0.0703162974 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
9 Hb_148909_030 0.0712208764 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
10 Hb_111985_080 0.0729971082 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
11 Hb_000960_100 0.0738870676 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
12 Hb_004718_010 0.0747270051 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
13 Hb_001493_040 0.0768601268 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
14 Hb_034243_020 0.0769782612 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
15 Hb_000922_370 0.0775094869 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
16 Hb_002174_020 0.0776672997 - - ring finger protein, putative [Ricinus communis]
17 Hb_002329_040 0.0776739582 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
18 Hb_030627_060 0.0778588501 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
19 Hb_000563_640 0.0788151202 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
20 Hb_010315_090 0.0788869194 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_002301_080 Hb_002301_080 Hb_116929_010 Hb_116929_010 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_133047_010 Hb_133047_010 Hb_002301_080--Hb_133047_010 Hb_002400_240 Hb_002400_240 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_148909_030 Hb_148909_030 Hb_116929_010--Hb_148909_030 Hb_116929_010--Hb_002400_240 Hb_116929_010--Hb_003044_020 Hb_000183_020 Hb_000183_020 Hb_116929_010--Hb_000183_020 Hb_003623_030 Hb_003623_030 Hb_116929_010--Hb_003623_030 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040 Hb_003656_180 Hb_003656_180 Hb_117552_010--Hb_003656_180 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_117552_010--Hb_002400_240 Hb_117552_010--Hb_000922_370 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_133047_010--Hb_148909_030 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_030627_060 Hb_030627_060 Hb_002400_240--Hb_030627_060 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_001599_030 Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000714_050 Hb_000714_050 Hb_000320_200--Hb_000714_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2435 27.0136 9.38138 14.0639 34.3193 33.1039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.006 10.6478 17.7749 19.7764 18.9088

CAGE analysis