Hb_002301_120

Information

Type -
Description -
Location Contig2301: 136965-139573
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05630g
description hypothetical protein
nr
ID XP_012091661.1
description PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9N3J1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05630g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24125: 136588-139722 , PASA_asmbl_24126: 137049-137212 , PASA_asmbl_24127: 138533-139553
cDNA
(Sanger)
(ID:Location)		 033_G06.ab1: 136588-138621

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_120 0.0 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
2 Hb_001511_210 0.080626815 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
3 Hb_001258_130 0.0901450783 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
4 Hb_003894_170 0.094711487 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
5 Hb_001439_050 0.0980903254 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
6 Hb_001053_170 0.1056894947 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
7 Hb_000073_040 0.1064521328 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
8 Hb_002518_040 0.1065993169 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_008021_060 0.1076102328 - - Squalene monooxygenase, putative [Ricinus communis]
10 Hb_019516_010 0.1078182182 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
11 Hb_011671_050 0.1079769788 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
12 Hb_000722_030 0.1102577039 - - putative plant disease resistance family protein [Populus trichocarpa]
13 Hb_001856_190 0.110599064 - - SP1L, putative [Ricinus communis]
14 Hb_002045_160 0.1122444886 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
15 Hb_007922_030 0.1123403892 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
16 Hb_002066_100 0.1126518433 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
17 Hb_001079_060 0.1141174598 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
18 Hb_001958_040 0.1175378456 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
19 Hb_016297_010 0.11818999 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
20 Hb_001386_060 0.1185648364 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]

Gene co-expression network

sample Hb_002301_120 Hb_002301_120 Hb_001511_210 Hb_001511_210 Hb_002301_120--Hb_001511_210 Hb_001258_130 Hb_001258_130 Hb_002301_120--Hb_001258_130 Hb_003894_170 Hb_003894_170 Hb_002301_120--Hb_003894_170 Hb_001439_050 Hb_001439_050 Hb_002301_120--Hb_001439_050 Hb_001053_170 Hb_001053_170 Hb_002301_120--Hb_001053_170 Hb_000073_040 Hb_000073_040 Hb_002301_120--Hb_000073_040 Hb_001511_210--Hb_001258_130 Hb_002066_100 Hb_002066_100 Hb_001511_210--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_001511_210--Hb_016297_010 Hb_000722_030 Hb_000722_030 Hb_001511_210--Hb_000722_030 Hb_002374_470 Hb_002374_470 Hb_001511_210--Hb_002374_470 Hb_001258_130--Hb_016297_010 Hb_105148_020 Hb_105148_020 Hb_001258_130--Hb_105148_020 Hb_000139_040 Hb_000139_040 Hb_001258_130--Hb_000139_040 Hb_001258_130--Hb_002066_100 Hb_001258_130--Hb_000722_030 Hb_000109_140 Hb_000109_140 Hb_003894_170--Hb_000109_140 Hb_000189_180 Hb_000189_180 Hb_003894_170--Hb_000189_180 Hb_001079_060 Hb_001079_060 Hb_003894_170--Hb_001079_060 Hb_004037_040 Hb_004037_040 Hb_003894_170--Hb_004037_040 Hb_004076_060 Hb_004076_060 Hb_003894_170--Hb_004076_060 Hb_003101_020 Hb_003101_020 Hb_001439_050--Hb_003101_020 Hb_062807_010 Hb_062807_010 Hb_001439_050--Hb_062807_010 Hb_108576_020 Hb_108576_020 Hb_001439_050--Hb_108576_020 Hb_002518_040 Hb_002518_040 Hb_001439_050--Hb_002518_040 Hb_007313_030 Hb_007313_030 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_002045_160 Hb_002045_160 Hb_001053_170--Hb_002045_160 Hb_001053_170--Hb_001511_210 Hb_001053_170--Hb_011671_050 Hb_005116_120 Hb_005116_120 Hb_001053_170--Hb_005116_120 Hb_001053_170--Hb_001439_050 Hb_001958_040 Hb_001958_040 Hb_000073_040--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_000073_040--Hb_000397_060 Hb_000258_400 Hb_000258_400 Hb_000073_040--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_000073_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_000073_040--Hb_072620_010 Hb_000073_040--Hb_002045_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0446768 0.296853 23.6591 12.4777 0.260824 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.13877 9.12925

CAGE analysis