Hb_002301_130

Information

Type -
Description -
Location Contig2301: 140507-141813
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05620g
description hypothetical protein
nr
ID XP_011043432.1
description PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
swissprot
ID Q93ZJ3
description Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1
trembl
ID U5FVD0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24125: 136588-139722 , PASA_asmbl_24127: 138533-139553 , PASA_asmbl_24128: 140531-143326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_130 0.0 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
2 Hb_011004_080 0.0849997977 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
3 Hb_047823_010 0.091409395 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
4 Hb_009486_150 0.1085407248 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
5 Hb_000331_640 0.1147099298 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
6 Hb_000062_650 0.1184046122 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
7 Hb_007044_130 0.1230730673 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
8 Hb_003528_060 0.1260012609 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
9 Hb_003058_080 0.1272526008 - - Chaperonin 10 isoform 1 [Theobroma cacao]
10 Hb_001214_140 0.127743114 - - 60S ribosomal protein L27a, putative [Ricinus communis]
11 Hb_004052_020 0.1277855497 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
12 Hb_003641_020 0.1280897277 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
13 Hb_002742_050 0.1283139391 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
14 Hb_000012_220 0.1298889111 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002259_070 0.1305010952 - - taz protein, putative [Ricinus communis]
16 Hb_129924_010 0.1337591024 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
17 Hb_175215_010 0.1340516224 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
18 Hb_000046_560 0.1342132058 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
19 Hb_012753_230 0.134750698 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
20 Hb_013405_090 0.1363263589 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_130 Hb_002301_130 Hb_011004_080 Hb_011004_080 Hb_002301_130--Hb_011004_080 Hb_047823_010 Hb_047823_010 Hb_002301_130--Hb_047823_010 Hb_009486_150 Hb_009486_150 Hb_002301_130--Hb_009486_150 Hb_000331_640 Hb_000331_640 Hb_002301_130--Hb_000331_640 Hb_000062_650 Hb_000062_650 Hb_002301_130--Hb_000062_650 Hb_007044_130 Hb_007044_130 Hb_002301_130--Hb_007044_130 Hb_011004_080--Hb_047823_010 Hb_004052_020 Hb_004052_020 Hb_011004_080--Hb_004052_020 Hb_011004_080--Hb_009486_150 Hb_175215_010 Hb_175215_010 Hb_011004_080--Hb_175215_010 Hb_012753_230 Hb_012753_230 Hb_011004_080--Hb_012753_230 Hb_047823_010--Hb_007044_130 Hb_003528_060 Hb_003528_060 Hb_047823_010--Hb_003528_060 Hb_013405_090 Hb_013405_090 Hb_047823_010--Hb_013405_090 Hb_003058_080 Hb_003058_080 Hb_047823_010--Hb_003058_080 Hb_129924_010 Hb_129924_010 Hb_047823_010--Hb_129924_010 Hb_009486_150--Hb_175215_010 Hb_009486_150--Hb_004052_020 Hb_021419_020 Hb_021419_020 Hb_009486_150--Hb_021419_020 Hb_000565_030 Hb_000565_030 Hb_009486_150--Hb_000565_030 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_000329_020 Hb_000329_020 Hb_000331_640--Hb_000329_020 Hb_002909_130 Hb_002909_130 Hb_000331_640--Hb_002909_130 Hb_000042_260 Hb_000042_260 Hb_000331_640--Hb_000042_260 Hb_009880_010 Hb_009880_010 Hb_000331_640--Hb_009880_010 Hb_000331_640--Hb_000062_650 Hb_002811_080 Hb_002811_080 Hb_000331_640--Hb_002811_080 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_000062_650--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9981 17.197 27.1872 16.0718 31.5444 32.9074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5106 124.828 12.6 17.699 14.3416

CAGE analysis