Hb_002301_140

Information

Type -
Description -
Location Contig2301: 144407-146521
Sequence    

Annotation

kegg
ID rcu:RCOM_1673610
description hypothetical protein
nr
ID XP_012091656.1
description PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
swissprot
ID O49453
description Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1
trembl
ID A0A067JE12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24130: 144412-146530
cDNA
(Sanger)
(ID:Location)		 007_H04.ab1: 144583-146530 , 009_H15.ab1: 144583-146530 , 013_D21.ab1: 144567-146531 , 022_K07.ab1: 144745-146528 , 038_F09.ab1: 144587-146530 , 048_A16.ab1: 144587-146530 , 051_F09.ab1: 144583-146530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_140 0.0 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
2 Hb_028995_040 0.0661303873 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
3 Hb_000200_100 0.0670880715 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
4 Hb_023226_040 0.0695830812 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
5 Hb_002007_060 0.0701412517 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
6 Hb_009773_020 0.0707235087 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
7 Hb_001235_190 0.0708579183 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
8 Hb_008173_090 0.073844785 - - glutathione peroxidase, putative [Ricinus communis]
9 Hb_001252_110 0.0741516255 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
10 Hb_000635_180 0.0759069179 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
11 Hb_002030_040 0.0763806722 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
12 Hb_000866_270 0.077085003 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
13 Hb_002284_010 0.0778929835 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004657_050 0.0785468895 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
15 Hb_029866_060 0.0798163626 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
16 Hb_002182_060 0.0818990861 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
17 Hb_000167_140 0.0829292113 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_005431_010 0.0846832242 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
19 Hb_001138_050 0.0848617876 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
20 Hb_005539_350 0.0852465686 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002301_140 Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_002301_140--Hb_028995_040 Hb_000200_100 Hb_000200_100 Hb_002301_140--Hb_000200_100 Hb_023226_040 Hb_023226_040 Hb_002301_140--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_001235_190 Hb_001235_190 Hb_002301_140--Hb_001235_190 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_000866_270 Hb_000866_270 Hb_028995_040--Hb_000866_270 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_004657_050 Hb_004657_050 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_008173_090 Hb_008173_090 Hb_000200_100--Hb_008173_090 Hb_000200_100--Hb_001235_190 Hb_001257_080 Hb_001257_080 Hb_000200_100--Hb_001257_080 Hb_000970_010 Hb_000970_010 Hb_000200_100--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_000200_100--Hb_002182_060 Hb_023226_040--Hb_002007_060 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_023226_040--Hb_004657_050 Hb_000000_160 Hb_000000_160 Hb_023226_040--Hb_000000_160 Hb_023226_040--Hb_028995_040 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_002030_040 Hb_002030_040 Hb_009773_020--Hb_002030_040 Hb_065525_020 Hb_065525_020 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_001105_070 Hb_001105_070 Hb_009773_020--Hb_001105_070 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.784 96.2843 66.5514 87.8164 118.102 131.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
208.418 261.145 179.963 69.4922 33.029

CAGE analysis