Hb_002301_150

Information

Type -
Description -
Location Contig2301: 149814-154397
Sequence    

Annotation

kegg
ID tcc:TCM_029815
description Drought-responsive family protein
nr
ID XP_007025553.1
description Drought-responsive family protein [Theobroma cacao]
swissprot
ID Q688X9
description Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1
trembl
ID A0A061GEB0
description Drought-responsive family protein OS=Theobroma cacao GN=TCM_029815 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24131: 150022-154364 , PASA_asmbl_24132: 150026-154327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_150 0.0 - - Drought-responsive family protein [Theobroma cacao]
2 Hb_008013_050 0.0641347205 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
3 Hb_003502_060 0.06464054 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
4 Hb_004108_220 0.0651472154 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
5 Hb_000030_030 0.0674536426 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
6 Hb_006846_130 0.0686676768 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
7 Hb_168978_010 0.0712926578 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
8 Hb_000460_030 0.0712993228 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
9 Hb_003582_060 0.0729700052 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
10 Hb_007894_060 0.0736723504 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
11 Hb_003058_120 0.0756427387 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
12 Hb_004157_050 0.0764630685 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
13 Hb_005588_060 0.076807947 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
14 Hb_001703_060 0.0768117273 - - protein kinase, putative [Ricinus communis]
15 Hb_000510_300 0.0786357553 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
16 Hb_006570_080 0.0799777928 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
17 Hb_004109_220 0.0825216113 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
18 Hb_021068_040 0.0829681797 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
19 Hb_000069_720 0.0848977876 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
20 Hb_149985_010 0.0854421638 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]

Gene co-expression network

sample Hb_002301_150 Hb_002301_150 Hb_008013_050 Hb_008013_050 Hb_002301_150--Hb_008013_050 Hb_003502_060 Hb_003502_060 Hb_002301_150--Hb_003502_060 Hb_004108_220 Hb_004108_220 Hb_002301_150--Hb_004108_220 Hb_000030_030 Hb_000030_030 Hb_002301_150--Hb_000030_030 Hb_006846_130 Hb_006846_130 Hb_002301_150--Hb_006846_130 Hb_168978_010 Hb_168978_010 Hb_002301_150--Hb_168978_010 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_008013_050--Hb_000030_030 Hb_003502_060--Hb_000030_030 Hb_089032_030 Hb_089032_030 Hb_003502_060--Hb_089032_030 Hb_003502_060--Hb_003151_040 Hb_015778_010 Hb_015778_010 Hb_003502_060--Hb_015778_010 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_005846_040 Hb_005846_040 Hb_000030_030--Hb_005846_040 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_000030_030--Hb_003151_040 Hb_000030_030--Hb_168978_010 Hb_000076_220 Hb_000076_220 Hb_006846_130--Hb_000076_220 Hb_000130_270 Hb_000130_270 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000359_060 Hb_000359_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_168978_010--Hb_149985_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4792 25.5763 32.5941 45.3151 18.3231 20.3214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3741 48.3756 33.4308 34.4532 27.6363

CAGE analysis