Hb_002301_160

Information

Type -
Description -
Location Contig2301: 155075-160450
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04740g
description POPTRDRAFT_758865; hypothetical protein
nr
ID XP_012092410.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
swissprot
ID Q7Y211
description Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2
trembl
ID A0A067JB16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21472 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at5g04780-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24131: 150022-154364 , PASA_asmbl_24132: 150026-154327 , PASA_asmbl_24133: 155271-156249 , PASA_asmbl_24134: 157884-158299 , PASA_asmbl_24135: 158707-158951
cDNA
(Sanger)
(ID:Location)		 026_J10.ab1: 155611-156249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
2 Hb_002045_070 0.0611028112 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
3 Hb_000110_120 0.0619810125 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
4 Hb_000009_290 0.0667479665 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
5 Hb_004627_030 0.0804647012 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
6 Hb_002042_150 0.0887164284 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
7 Hb_001489_110 0.090374944 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
8 Hb_045003_010 0.0922132736 - - Stomatin-1, putative [Ricinus communis]
9 Hb_000563_200 0.094421527 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
10 Hb_012305_130 0.0953255347 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
11 Hb_000849_130 0.0954549228 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
12 Hb_000220_100 0.098858697 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
13 Hb_000384_070 0.0991526057 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000327_380 0.1001848167 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
15 Hb_002995_050 0.1001926691 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
16 Hb_004230_020 0.1003348936 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
17 Hb_000365_270 0.1004181563 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
18 Hb_021409_080 0.1010583582 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
19 Hb_005460_060 0.1018684019 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
20 Hb_180343_010 0.1043401012 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002301_160 Hb_002301_160 Hb_002045_070 Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_002301_160--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_002045_070--Hb_000009_290 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_012305_130 Hb_012305_130 Hb_000110_120--Hb_012305_130 Hb_000110_120--Hb_000009_290 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_004627_030--Hb_012305_130 Hb_045003_010 Hb_045003_010 Hb_002042_150--Hb_045003_010 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_000384_070 Hb_000384_070 Hb_002042_150--Hb_000384_070 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_002042_150--Hb_004108_220 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04122 3.93744 5.67489 12.369 2.13902 2.83023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.26339 10.5887 5.90217 5.47097 4.57135

CAGE analysis