Hb_002301_170

Information

Type -
Description -
Location Contig2301: 160855-166873
Sequence    

Annotation

kegg
ID tcc:TCM_029818
description MAC/Perforin domain-containing protein
nr
ID XP_007025556.1
description MAC/Perforin domain-containing protein [Theobroma cacao]
swissprot
ID Q9SGN6
description MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=2 SV=1
trembl
ID A0A061GFL2
description MAC/Perforin domain-containing protein OS=Theobroma cacao GN=TCM_029818 PE=4 SV=1
Gene Ontology
ID GO:0005737
description macpf domain-containing protein nsl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24138: 160979-166735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_170 0.0 - - MAC/Perforin domain-containing protein [Theobroma cacao]
2 Hb_052764_030 0.0885910292 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
3 Hb_009486_160 0.0923349104 - - PREDICTED: metacaspase-1 [Jatropha curcas]
4 Hb_001439_230 0.0997485608 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
5 Hb_001862_110 0.1063939619 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_003711_010 0.107483212 - - isopropylmalate synthase, putative [Ricinus communis]
7 Hb_000363_120 0.1119107137 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
8 Hb_014068_050 0.1127495886 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
9 Hb_002812_010 0.1130220213 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
10 Hb_001488_040 0.1141617276 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
11 Hb_002631_040 0.1148671664 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
12 Hb_001427_150 0.1152569497 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
13 Hb_001396_010 0.1154156828 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
14 Hb_000291_010 0.1162326846 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
15 Hb_006538_080 0.1172207503 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
16 Hb_000631_120 0.1188855623 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
17 Hb_001104_170 0.1194667422 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
18 Hb_000111_180 0.1204038792 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
19 Hb_000699_210 0.1212217446 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
20 Hb_004899_040 0.1213298241 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]

Gene co-expression network

sample Hb_002301_170 Hb_002301_170 Hb_052764_030 Hb_052764_030 Hb_002301_170--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_002301_170--Hb_009486_160 Hb_001439_230 Hb_001439_230 Hb_002301_170--Hb_001439_230 Hb_001862_110 Hb_001862_110 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_000363_120 Hb_000363_120 Hb_002301_170--Hb_000363_120 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_001104_170 Hb_001104_170 Hb_052764_030--Hb_001104_170 Hb_000291_010 Hb_000291_010 Hb_052764_030--Hb_000291_010 Hb_011249_060 Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_004774_020 Hb_004774_020 Hb_001439_230--Hb_004774_020 Hb_000000_230 Hb_000000_230 Hb_001439_230--Hb_000000_230 Hb_006970_050 Hb_006970_050 Hb_001439_230--Hb_006970_050 Hb_000086_420 Hb_000086_420 Hb_001439_230--Hb_000086_420 Hb_000490_060 Hb_000490_060 Hb_001439_230--Hb_000490_060 Hb_007054_040 Hb_007054_040 Hb_001862_110--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_001862_110--Hb_001541_250 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_001862_110--Hb_002812_010 Hb_001723_010 Hb_001723_010 Hb_003711_010--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_003711_010--Hb_000340_030 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_000373_170 Hb_000373_170 Hb_003711_010--Hb_000373_170 Hb_000139_320 Hb_000139_320 Hb_003711_010--Hb_000139_320 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000363_120--Hb_000340_030 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02109 16.7374 9.73036 4.84002 3.23553 3.99782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40208 6.47318 4.40397 10.0898 4.29998

CAGE analysis