Hb_002301_180

Information

Type -
Description -
Location Contig2301: 183989-188002
Sequence    

Annotation

kegg
ID rcu:RCOM_1673770
description fad NAD binding oxidoreductases, putative
nr
ID XP_012091651.1
description PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
swissprot
ID Q9FN32
description Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1
trembl
ID B9RBA9
description Protein yippee-like OS=Ricinus communis GN=RCOM_1673770 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24139: 184129-187017 , PASA_asmbl_24140: 184039-187945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_180 0.0 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
2 Hb_000207_400 0.1171172511 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
3 Hb_002193_030 0.1172054399 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
4 Hb_000795_060 0.1272954621 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
5 Hb_010128_100 0.1320992962 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
6 Hb_004734_040 0.1340940487 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
7 Hb_062226_140 0.1341111938 - - PREDICTED: protein NEDD1 [Jatropha curcas]
8 Hb_000212_290 0.1371826456 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
9 Hb_012506_050 0.1387108475 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
10 Hb_000958_110 0.1410294346 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
11 Hb_000731_170 0.1423939949 - - PREDICTED: phospholipase A I [Jatropha curcas]
12 Hb_000506_120 0.1428102474 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
13 Hb_001269_610 0.1435537546 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
14 Hb_006153_110 0.1440181475 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_089995_010 0.144166778 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
16 Hb_000053_020 0.14605564 - - F-box and wd40 domain protein, putative [Ricinus communis]
17 Hb_005391_040 0.1466515378 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
18 Hb_000915_160 0.1482494 - - PREDICTED: histone H1 [Jatropha curcas]
19 Hb_005188_080 0.1487632939 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_002851_020 0.1493292022 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_180 Hb_002301_180 Hb_000207_400 Hb_000207_400 Hb_002301_180--Hb_000207_400 Hb_002193_030 Hb_002193_030 Hb_002301_180--Hb_002193_030 Hb_000795_060 Hb_000795_060 Hb_002301_180--Hb_000795_060 Hb_010128_100 Hb_010128_100 Hb_002301_180--Hb_010128_100 Hb_004734_040 Hb_004734_040 Hb_002301_180--Hb_004734_040 Hb_062226_140 Hb_062226_140 Hb_002301_180--Hb_062226_140 Hb_000207_400--Hb_062226_140 Hb_008695_050 Hb_008695_050 Hb_000207_400--Hb_008695_050 Hb_002805_220 Hb_002805_220 Hb_000207_400--Hb_002805_220 Hb_001047_240 Hb_001047_240 Hb_000207_400--Hb_001047_240 Hb_000212_290 Hb_000212_290 Hb_000207_400--Hb_000212_290 Hb_005391_040 Hb_005391_040 Hb_000207_400--Hb_005391_040 Hb_001195_200 Hb_001195_200 Hb_002193_030--Hb_001195_200 Hb_000917_230 Hb_000917_230 Hb_002193_030--Hb_000917_230 Hb_000327_180 Hb_000327_180 Hb_002193_030--Hb_000327_180 Hb_003465_030 Hb_003465_030 Hb_002193_030--Hb_003465_030 Hb_002994_030 Hb_002994_030 Hb_002193_030--Hb_002994_030 Hb_001268_410 Hb_001268_410 Hb_002193_030--Hb_001268_410 Hb_001454_260 Hb_001454_260 Hb_000795_060--Hb_001454_260 Hb_000003_080 Hb_000003_080 Hb_000795_060--Hb_000003_080 Hb_001842_100 Hb_001842_100 Hb_000795_060--Hb_001842_100 Hb_010423_040 Hb_010423_040 Hb_000795_060--Hb_010423_040 Hb_000272_020 Hb_000272_020 Hb_000795_060--Hb_000272_020 Hb_001421_060 Hb_001421_060 Hb_000795_060--Hb_001421_060 Hb_000483_300 Hb_000483_300 Hb_010128_100--Hb_000483_300 Hb_001269_190 Hb_001269_190 Hb_010128_100--Hb_001269_190 Hb_023371_020 Hb_023371_020 Hb_010128_100--Hb_023371_020 Hb_001951_150 Hb_001951_150 Hb_010128_100--Hb_001951_150 Hb_001141_420 Hb_001141_420 Hb_010128_100--Hb_001141_420 Hb_001512_010 Hb_001512_010 Hb_010128_100--Hb_001512_010 Hb_004734_040--Hb_005391_040 Hb_000903_060 Hb_000903_060 Hb_004734_040--Hb_000903_060 Hb_001653_020 Hb_001653_020 Hb_004734_040--Hb_001653_020 Hb_007894_060 Hb_007894_060 Hb_004734_040--Hb_007894_060 Hb_001301_110 Hb_001301_110 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050 Hb_000342_100 Hb_000342_100 Hb_062226_140--Hb_000342_100 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.9111 43.9997 18.9994 42.0516 23.9017 34.8288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.991 84.528 23.3878 51.8505 60.6096

CAGE analysis