Hb_002301_220

Information

Type transcription factor
Description TF Family: C3H
Location Contig2301: 243809-248285
Sequence    

Annotation

kegg
ID cit:102615757
description protein FRIGIDA-ESSENTIAL 1-like
nr
ID XP_012091647.1
description PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q84VG7
description Protein FRIGIDA-ESSENTIAL 1 OS=Arabidopsis thaliana GN=FES1 PE=1 SV=2
trembl
ID A0A067JB11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21467 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24145: 244095-246275 , PASA_asmbl_24146: 246400-247312 , PASA_asmbl_24147: 246400-247312 , PASA_asmbl_24148: 247591-248305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_220 0.0 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
2 Hb_003656_160 0.0639988988 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
3 Hb_001541_020 0.0659580609 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
4 Hb_008554_120 0.0720951387 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
5 Hb_000032_320 0.0731075847 - - protein binding protein, putative [Ricinus communis]
6 Hb_001486_080 0.0780078783 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
7 Hb_022408_010 0.0788433329 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
8 Hb_001616_050 0.0795578653 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
9 Hb_000002_040 0.0802494686 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
10 Hb_002221_050 0.0805111625 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
11 Hb_005532_050 0.0807561828 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_033834_010 0.0816269702 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_000976_320 0.0833492402 - - UPF0061 protein azo1574 [Morus notabilis]
14 Hb_106552_050 0.0837632989 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
15 Hb_000224_060 0.0843151872 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
16 Hb_008803_090 0.084452964 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
17 Hb_002007_350 0.084632425 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
18 Hb_004055_150 0.0851097181 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000465_470 0.0855158043 - - unknown [Picea sitchensis]
20 Hb_003020_110 0.0856214175 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002301_220 Hb_002301_220 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_102129_070 Hb_102129_070 Hb_008554_120--Hb_102129_070 Hb_007982_070 Hb_007982_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180 Hb_156850_030 Hb_156850_030 Hb_000032_320--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000032_320--Hb_001728_100 Hb_000032_320--Hb_001541_020 Hb_000032_320--Hb_022408_010 Hb_006586_050 Hb_006586_050 Hb_000032_320--Hb_006586_050 Hb_000406_240 Hb_000406_240 Hb_001486_080--Hb_000406_240 Hb_001486_080--Hb_007982_070 Hb_001486_080--Hb_008554_120 Hb_005883_010 Hb_005883_010 Hb_001486_080--Hb_005883_010 Hb_134951_010 Hb_134951_010 Hb_001486_080--Hb_134951_010 Hb_022408_010--Hb_000244_250 Hb_002255_050 Hb_002255_050 Hb_022408_010--Hb_002255_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_022408_010--Hb_000107_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9522 15.2602 10.7985 5.58397 22.4874 20.8176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6537 10.0028 15.6011 9.65826 6.05377

CAGE analysis