Hb_002301_230

Information

Type -
Description -
Location Contig2301: 252621-253163
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05540g
description hypothetical protein
nr
ID KDP20995.1
description hypothetical protein JCGZ_21466 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24149: 252955-253231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_230 0.0 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
2 Hb_155764_010 0.0864707744 - - -
3 Hb_012779_100 0.089049825 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029866_020 0.0949525062 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
5 Hb_002056_060 0.0974375236 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_002216_040 0.1002920759 - - PREDICTED: protein PRD1 [Jatropha curcas]
7 Hb_003097_210 0.1014155077 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
8 Hb_000503_050 0.1016406612 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
9 Hb_000834_270 0.1051603867 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_003408_020 0.1059952796 - - hypothetical protein RCOM_0453040 [Ricinus communis]
11 Hb_011953_020 0.1061679239 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
12 Hb_031862_110 0.1062994729 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_000671_090 0.107625938 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
14 Hb_000753_130 0.1076370822 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
15 Hb_000010_470 0.1090060253 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
16 Hb_000671_150 0.1092867222 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
17 Hb_000696_310 0.1098274126 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
18 Hb_000496_060 0.1102397706 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
19 Hb_007943_090 0.1116175978 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_116898_010 0.111779347 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_230 Hb_002301_230 Hb_155764_010 Hb_155764_010 Hb_002301_230--Hb_155764_010 Hb_012779_100 Hb_012779_100 Hb_002301_230--Hb_012779_100 Hb_029866_020 Hb_029866_020 Hb_002301_230--Hb_029866_020 Hb_002056_060 Hb_002056_060 Hb_002301_230--Hb_002056_060 Hb_002216_040 Hb_002216_040 Hb_002301_230--Hb_002216_040 Hb_003097_210 Hb_003097_210 Hb_002301_230--Hb_003097_210 Hb_155764_010--Hb_003097_210 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_000023_340 Hb_000023_340 Hb_012779_100--Hb_000023_340 Hb_000444_050 Hb_000444_050 Hb_012779_100--Hb_000444_050 Hb_000671_150 Hb_000671_150 Hb_012779_100--Hb_000671_150 Hb_000696_310 Hb_000696_310 Hb_012779_100--Hb_000696_310 Hb_000671_090 Hb_000671_090 Hb_012779_100--Hb_000671_090 Hb_000347_410 Hb_000347_410 Hb_029866_020--Hb_000347_410 Hb_001396_100 Hb_001396_100 Hb_029866_020--Hb_001396_100 Hb_000240_090 Hb_000240_090 Hb_029866_020--Hb_000240_090 Hb_005731_170 Hb_005731_170 Hb_029866_020--Hb_005731_170 Hb_011953_020 Hb_011953_020 Hb_029866_020--Hb_011953_020 Hb_007943_090 Hb_007943_090 Hb_029866_020--Hb_007943_090 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_000503_050 Hb_000503_050 Hb_002216_040--Hb_000503_050 Hb_005699_070 Hb_005699_070 Hb_002216_040--Hb_005699_070 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_000834_270 Hb_000834_270 Hb_002216_040--Hb_000834_270 Hb_002216_040--Hb_000010_470 Hb_004678_050 Hb_004678_050 Hb_002216_040--Hb_004678_050 Hb_010560_040 Hb_010560_040 Hb_003097_210--Hb_010560_040 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003097_210--Hb_000865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67989 0.758005 0.792294 0.931704 1.02606 1.79093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99792 3.7881 4.77014 2.28865 0.702789

CAGE analysis