Hb_002301_270

Information

Type -
Description -
Location Contig2301: 282115-286212
Sequence    

Annotation

kegg
ID rcu:RCOM_1673920
description trypsin domain-containing protein, putative
nr
ID XP_012091640.1
description PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
swissprot
ID Q8VZD4
description Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis thaliana GN=DEG15 PE=1 SV=2
trembl
ID A0A067JB48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21463 PE=4 SV=1
Gene Ontology
ID GO:0008233
description protease-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24158: 267377-282160 , PASA_asmbl_24161: 283154-284544 , PASA_asmbl_24163: 284603-285707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_270 0.0 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
2 Hb_028872_120 0.0725858949 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
3 Hb_009151_020 0.0730537396 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
4 Hb_000347_570 0.0760705372 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
5 Hb_022693_030 0.0785183555 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
6 Hb_001178_150 0.0796172531 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
7 Hb_007943_120 0.0821514664 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
8 Hb_000914_080 0.0832602211 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000329_130 0.0835219786 - - beta-tubulin cofactor d, putative [Ricinus communis]
10 Hb_017895_020 0.085454176 - - Vacuolar protein sorting protein, putative [Ricinus communis]
11 Hb_006452_160 0.0862009241 - - structural constituent of ribosome, putative [Ricinus communis]
12 Hb_003540_160 0.0891336262 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
13 Hb_000025_650 0.0899565032 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
14 Hb_005539_190 0.0901805143 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
15 Hb_140049_020 0.0909071887 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
16 Hb_000504_160 0.0914694371 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
17 Hb_004899_030 0.0916683474 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
18 Hb_002045_150 0.0932999601 - - histone acetyltransferase gcn5, putative [Ricinus communis]
19 Hb_001771_120 0.0936602063 - - K+ transport growth defect-like protein [Hevea brasiliensis]
20 Hb_000120_620 0.0944375825 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_270 Hb_002301_270 Hb_028872_120 Hb_028872_120 Hb_002301_270--Hb_028872_120 Hb_009151_020 Hb_009151_020 Hb_002301_270--Hb_009151_020 Hb_000347_570 Hb_000347_570 Hb_002301_270--Hb_000347_570 Hb_022693_030 Hb_022693_030 Hb_002301_270--Hb_022693_030 Hb_001178_150 Hb_001178_150 Hb_002301_270--Hb_001178_150 Hb_007943_120 Hb_007943_120 Hb_002301_270--Hb_007943_120 Hb_028872_120--Hb_007943_120 Hb_000329_130 Hb_000329_130 Hb_028872_120--Hb_000329_130 Hb_017895_020 Hb_017895_020 Hb_028872_120--Hb_017895_020 Hb_028872_120--Hb_001178_150 Hb_010315_090 Hb_010315_090 Hb_028872_120--Hb_010315_090 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_009151_020--Hb_000329_130 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_000347_570--Hb_001178_150 Hb_000347_570--Hb_001473_090 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050 Hb_002093_030 Hb_002093_030 Hb_022693_030--Hb_002093_030 Hb_022693_030--Hb_009151_020 Hb_002749_110 Hb_002749_110 Hb_022693_030--Hb_002749_110 Hb_005892_030 Hb_005892_030 Hb_022693_030--Hb_005892_030 Hb_022693_030--Hb_000347_570 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_001473_090 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_005188_060 Hb_005188_060 Hb_007943_120--Hb_005188_060 Hb_005883_010 Hb_005883_010 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2941 10.7657 7.89105 3.77138 16.6412 14.4404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24094 4.72436 2.59843 4.70893 5.04929

CAGE analysis