Hb_002301_280

Information

Type transcription factor
Description TF Family: SBP
Location Contig2301: 288413-295563
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05500g
description mitochondrial substrate carrier family protein
nr
ID KDP20991.1
description hypothetical protein JCGZ_21462 [Jatropha curcas]
swissprot
ID Q84UC7
description Mitochondrial arginine transporter BAC1 OS=Arabidopsis thaliana GN=BAC1 PE=1 SV=1
trembl
ID A0A067JB05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21462 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial arginine transporter bac1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24165: 288508-290608 , PASA_asmbl_24166: 289761-289880 , PASA_asmbl_24167: 290612-291149 , PASA_asmbl_24168: 291599-291920 , PASA_asmbl_24170: 293229-293548
cDNA
(Sanger)
(ID:Location)		 006_B15r.ab1: 292173-295657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_280 0.0 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
2 Hb_002272_260 0.0906647638 - - -
3 Hb_005389_150 0.101059348 - - conserved hypothetical protein [Ricinus communis]
4 Hb_137403_010 0.102090542 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
5 Hb_002107_160 0.1030646097 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_007101_100 0.105349379 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_001009_040 0.1071597615 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
8 Hb_000065_080 0.1082674801 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
9 Hb_010381_120 0.1119705179 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
10 Hb_000101_090 0.1128780216 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
11 Hb_000179_170 0.1135213684 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
12 Hb_000363_500 0.1135947444 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
13 Hb_001329_230 0.1144163083 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
14 Hb_003266_050 0.1148977099 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
15 Hb_007254_040 0.1157194402 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
16 Hb_000268_020 0.1157813473 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000676_290 0.116254888 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
18 Hb_004374_200 0.1170459985 - - putative GMP synthase [Oxybasis rubra]
19 Hb_004143_110 0.1188078405 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
20 Hb_011310_190 0.1189445693 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_280 Hb_002301_280 Hb_002272_260 Hb_002272_260 Hb_002301_280--Hb_002272_260 Hb_005389_150 Hb_005389_150 Hb_002301_280--Hb_005389_150 Hb_137403_010 Hb_137403_010 Hb_002301_280--Hb_137403_010 Hb_002107_160 Hb_002107_160 Hb_002301_280--Hb_002107_160 Hb_007101_100 Hb_007101_100 Hb_002301_280--Hb_007101_100 Hb_001009_040 Hb_001009_040 Hb_002301_280--Hb_001009_040 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_004453_150 Hb_004453_150 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_003266_050 Hb_003266_050 Hb_005389_150--Hb_003266_050 Hb_005389_150--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_003656_140 Hb_003656_140 Hb_137403_010--Hb_003656_140 Hb_002023_020 Hb_002023_020 Hb_137403_010--Hb_002023_020 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_000364_150 Hb_000364_150 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010 Hb_001158_220 Hb_001158_220 Hb_002107_160--Hb_001158_220 Hb_000157_030 Hb_000157_030 Hb_002107_160--Hb_000157_030 Hb_002107_160--Hb_010691_060 Hb_002495_040 Hb_002495_040 Hb_002107_160--Hb_002495_040 Hb_000120_500 Hb_000120_500 Hb_002107_160--Hb_000120_500 Hb_000465_430 Hb_000465_430 Hb_002107_160--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_004374_200 Hb_004374_200 Hb_007101_100--Hb_004374_200 Hb_001454_140 Hb_001454_140 Hb_007101_100--Hb_001454_140 Hb_002232_170 Hb_002232_170 Hb_007101_100--Hb_002232_170 Hb_002374_160 Hb_002374_160 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190 Hb_001009_040--Hb_000169_010 Hb_000808_040 Hb_000808_040 Hb_001009_040--Hb_000808_040 Hb_061908_010 Hb_061908_010 Hb_001009_040--Hb_061908_010 Hb_001009_040--Hb_001158_220 Hb_008406_160 Hb_008406_160 Hb_001009_040--Hb_008406_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06462 1.21587 1.92249 2.85053 4.44133 10.2655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.332 4.45868 2.58014 2.51493 1.4377

CAGE analysis