Hb_002301_290

Information

Type transcription factor
Description TF Family: SBP
Location Contig2301: 292079-295668
Sequence    

Annotation

kegg
ID rcu:RCOM_1674040
description Squamosa promoter-binding protein, putative
nr
ID XP_002509450.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q38741
description Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1
trembl
ID B9RBB6
description Squamosa promoter-binding-like protein OS=Ricinus communis GN=RCOM_1674040 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24169: 292078-295665
cDNA
(Sanger)
(ID:Location)		 006_B15.ab1: 292173-295665 , 034_M17.ab1: 292118-295533

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_290 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_001373_150 0.1271337928 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
3 Hb_002471_100 0.1301701138 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
4 Hb_008554_020 0.1382556766 - - -
5 Hb_000390_200 0.1401696424 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
6 Hb_004310_030 0.1424229063 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
7 Hb_006501_110 0.1466194276 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
8 Hb_046157_020 0.1478193785 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
9 Hb_011316_100 0.149923609 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
10 Hb_000699_110 0.1500062636 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
11 Hb_004108_080 0.1507969822 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
12 Hb_000179_170 0.153351051 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
13 Hb_007254_040 0.1554072619 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
14 Hb_001135_050 0.1556931385 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
15 Hb_000041_080 0.1560524079 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
16 Hb_000092_130 0.1560751256 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
17 Hb_030565_130 0.1563988444 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
18 Hb_001623_240 0.1564020725 - - hypothetical protein VITISV_004933 [Vitis vinifera]
19 Hb_035273_030 0.1598326592 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
20 Hb_117134_010 0.160080849 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_290 Hb_002301_290 Hb_001373_150 Hb_001373_150 Hb_002301_290--Hb_001373_150 Hb_002471_100 Hb_002471_100 Hb_002301_290--Hb_002471_100 Hb_008554_020 Hb_008554_020 Hb_002301_290--Hb_008554_020 Hb_000390_200 Hb_000390_200 Hb_002301_290--Hb_000390_200 Hb_004310_030 Hb_004310_030 Hb_002301_290--Hb_004310_030 Hb_006501_110 Hb_006501_110 Hb_002301_290--Hb_006501_110 Hb_030565_130 Hb_030565_130 Hb_001373_150--Hb_030565_130 Hb_001373_150--Hb_008554_020 Hb_002235_400 Hb_002235_400 Hb_001373_150--Hb_002235_400 Hb_000184_040 Hb_000184_040 Hb_001373_150--Hb_000184_040 Hb_001373_150--Hb_006501_110 Hb_002471_100--Hb_001373_150 Hb_000072_070 Hb_000072_070 Hb_002471_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_002471_100--Hb_035273_030 Hb_011316_100 Hb_011316_100 Hb_002471_100--Hb_011316_100 Hb_005892_060 Hb_005892_060 Hb_002471_100--Hb_005892_060 Hb_007254_040 Hb_007254_040 Hb_008554_020--Hb_007254_040 Hb_007317_180 Hb_007317_180 Hb_008554_020--Hb_007317_180 Hb_008554_020--Hb_004310_030 Hb_011310_190 Hb_011310_190 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010 Hb_000179_170 Hb_000179_170 Hb_000390_200--Hb_000179_170 Hb_001416_010 Hb_001416_010 Hb_000390_200--Hb_001416_010 Hb_000390_200--Hb_006501_110 Hb_004899_050 Hb_004899_050 Hb_000390_200--Hb_004899_050 Hb_000390_200--Hb_011310_190 Hb_004310_030--Hb_007254_040 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
203.716 22.9962 72.4354 66.1054 101.68 123.085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
437.77 120.446 89.8656 74.4543 57.9649

CAGE analysis