Hb_002301_320

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2301: 317728-318663
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04590g
description POPTRDRAFT_758879; hypothetical protein
nr
ID XP_002305784.1
description hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
swissprot
ID Q8LDR0
description Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2
trembl
ID B9H2S7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24175: 318273-319070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_320 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
2 Hb_001488_100 0.0873492971 - - -
3 Hb_002835_170 0.094542589 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
4 Hb_000571_070 0.1029396874 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
5 Hb_103873_010 0.1085829272 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
6 Hb_002248_050 0.1109849875 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
7 Hb_003001_030 0.1119112426 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_011457_100 0.1130363728 - - ATP binding protein, putative [Ricinus communis]
9 Hb_005730_020 0.1139310642 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
10 Hb_000249_110 0.1139396625 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
11 Hb_027751_020 0.1183935684 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
12 Hb_002038_060 0.1207492561 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
13 Hb_003497_030 0.1219502109 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_014067_010 0.1221592185 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
15 Hb_000563_540 0.1246030042 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
16 Hb_002609_260 0.1256743784 - - CCCH-type zinc finger protein [Hevea brasiliensis]
17 Hb_000789_190 0.1268141653 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
18 Hb_006787_040 0.1302341844 - - polyadenylate-binding protein, putative [Ricinus communis]
19 Hb_000849_040 0.1314276086 - - transcription factor, putative [Ricinus communis]
20 Hb_002200_110 0.133125912 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002301_320 Hb_002301_320 Hb_001488_100 Hb_001488_100 Hb_002301_320--Hb_001488_100 Hb_002835_170 Hb_002835_170 Hb_002301_320--Hb_002835_170 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_103873_010 Hb_103873_010 Hb_002301_320--Hb_103873_010 Hb_002248_050 Hb_002248_050 Hb_002301_320--Hb_002248_050 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_003497_030 Hb_003497_030 Hb_001488_100--Hb_003497_030 Hb_001488_100--Hb_002835_170 Hb_011457_170 Hb_011457_170 Hb_001488_100--Hb_011457_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_000340_430 Hb_000340_430 Hb_001488_100--Hb_000340_430 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_002835_170--Hb_001606_070 Hb_027751_020 Hb_027751_020 Hb_000571_070--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_000571_070--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000571_070--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000571_070--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_000571_070--Hb_010931_100 Hb_002038_060 Hb_002038_060 Hb_103873_010--Hb_002038_060 Hb_103873_010--Hb_002248_050 Hb_014067_010 Hb_014067_010 Hb_103873_010--Hb_014067_010 Hb_001999_060 Hb_001999_060 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_000421_190 Hb_000421_190 Hb_002248_050--Hb_000421_190 Hb_002248_050--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_002248_050--Hb_006787_040 Hb_000329_600 Hb_000329_600 Hb_002248_050--Hb_000329_600 Hb_009510_030 Hb_009510_030 Hb_003001_030--Hb_009510_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_005730_020 Hb_005730_020 Hb_003001_030--Hb_005730_020 Hb_003001_030--Hb_002609_260 Hb_004126_010 Hb_004126_010 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.2271 2.05137 1.53766 2.40754 82.8859 100.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.3495 85.4857 114.339 6.92555 1.58675

CAGE analysis