Hb_002301_360

Information

Type -
Description -
Location Contig2301: 339150-341672
Sequence    

Annotation

kegg
ID cit:102620764
description hypothetical protein
nr
ID XP_006449364.1
description hypothetical protein CICLE_v10017252mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4W8Q0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017252mg PE=4 SV=1
Gene Ontology
ID GO:0006661
description hypothetical protein CICLE_v10017252mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_360 0.0 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
2 Hb_000109_240 0.1863541525 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
3 Hb_001865_080 0.1890814617 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
4 Hb_004734_040 0.1933233175 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
5 Hb_000903_060 0.2026638052 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
6 Hb_000923_090 0.2087660468 - - -
7 Hb_001476_060 0.2113040421 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
8 Hb_002675_140 0.21211396 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
9 Hb_002027_390 0.2123562383 - - shikimate dehydrogenase, putative [Ricinus communis]
10 Hb_001140_070 0.2141638154 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
11 Hb_000317_400 0.2150192466 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
12 Hb_000034_070 0.2150728155 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
13 Hb_000390_140 0.2152179964 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
14 Hb_001369_250 0.2167173383 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
15 Hb_003038_140 0.2170996783 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
16 Hb_006970_080 0.2183809594 - - PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
17 Hb_000441_150 0.2185560496 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_005391_040 0.2218931464 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
19 Hb_000009_660 0.2253512735 - - -
20 Hb_003106_220 0.2283152984 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_360 Hb_002301_360 Hb_000109_240 Hb_000109_240 Hb_002301_360--Hb_000109_240 Hb_001865_080 Hb_001865_080 Hb_002301_360--Hb_001865_080 Hb_004734_040 Hb_004734_040 Hb_002301_360--Hb_004734_040 Hb_000903_060 Hb_000903_060 Hb_002301_360--Hb_000903_060 Hb_000923_090 Hb_000923_090 Hb_002301_360--Hb_000923_090 Hb_001476_060 Hb_001476_060 Hb_002301_360--Hb_001476_060 Hb_002333_080 Hb_002333_080 Hb_000109_240--Hb_002333_080 Hb_000329_650 Hb_000329_650 Hb_000109_240--Hb_000329_650 Hb_000923_050 Hb_000923_050 Hb_000109_240--Hb_000923_050 Hb_001472_120 Hb_001472_120 Hb_000109_240--Hb_001472_120 Hb_011689_040 Hb_011689_040 Hb_000109_240--Hb_011689_040 Hb_000109_240--Hb_001865_080 Hb_000230_270 Hb_000230_270 Hb_001865_080--Hb_000230_270 Hb_002636_080 Hb_002636_080 Hb_001865_080--Hb_002636_080 Hb_000317_400 Hb_000317_400 Hb_001865_080--Hb_000317_400 Hb_001439_100 Hb_001439_100 Hb_001865_080--Hb_001439_100 Hb_005391_040 Hb_005391_040 Hb_004734_040--Hb_005391_040 Hb_004734_040--Hb_000903_060 Hb_001653_020 Hb_001653_020 Hb_004734_040--Hb_001653_020 Hb_007894_060 Hb_007894_060 Hb_004734_040--Hb_007894_060 Hb_001301_110 Hb_001301_110 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050 Hb_023732_030 Hb_023732_030 Hb_000903_060--Hb_023732_030 Hb_073973_100 Hb_073973_100 Hb_000903_060--Hb_073973_100 Hb_001018_050 Hb_001018_050 Hb_000903_060--Hb_001018_050 Hb_002197_050 Hb_002197_050 Hb_000903_060--Hb_002197_050 Hb_000556_120 Hb_000556_120 Hb_000903_060--Hb_000556_120 Hb_000390_140 Hb_000390_140 Hb_000923_090--Hb_000390_140 Hb_004162_210 Hb_004162_210 Hb_000923_090--Hb_004162_210 Hb_008695_050 Hb_008695_050 Hb_000923_090--Hb_008695_050 Hb_004800_060 Hb_004800_060 Hb_000923_090--Hb_004800_060 Hb_002609_160 Hb_002609_160 Hb_000923_090--Hb_002609_160 Hb_000923_090--Hb_007894_060 Hb_004429_090 Hb_004429_090 Hb_001476_060--Hb_004429_090 Hb_002675_140 Hb_002675_140 Hb_001476_060--Hb_002675_140 Hb_001369_250 Hb_001369_250 Hb_001476_060--Hb_001369_250 Hb_001104_230 Hb_001104_230 Hb_001476_060--Hb_001104_230 Hb_000034_070 Hb_000034_070 Hb_001476_060--Hb_000034_070 Hb_001104_100 Hb_001104_100 Hb_001476_060--Hb_001104_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11114 2.0333 2.69896 3.98761 1.19079 1.86159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.67958 3.10512 0.816387 7.2202 0.451749

CAGE analysis