Hb_002301_420

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2301: 373575-374580
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05320g
description hypothetical protein
nr
ID XP_006377370.1
description hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
swissprot
ID Q9FLI1
description Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1
trembl
ID U5G100
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05320g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24188: 373403-373839 , PASA_asmbl_24189: 373886-374418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_420 0.0 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
2 Hb_018591_010 0.0885058786 - - kinase, putative [Ricinus communis]
3 Hb_164283_010 0.1049034595 - - hypothetical protein RCOM_0725500 [Ricinus communis]
4 Hb_012368_080 0.10693677 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
5 Hb_000540_030 0.1069948634 - - Chitinase 1 precursor, putative [Ricinus communis]
6 Hb_006637_040 0.1081684828 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
7 Hb_018133_110 0.1088631053 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_004544_070 0.1127150676 - - unnamed protein product [Vitis vinifera]
9 Hb_000347_530 0.1174639098 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
10 Hb_098030_010 0.1186814928 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
11 Hb_002749_070 0.1291446521 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
12 Hb_002042_200 0.1308266479 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_008418_010 0.1321110044 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
14 Hb_000380_210 0.1322077499 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
15 Hb_003734_120 0.1326425055 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
16 Hb_000347_230 0.1348669534 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
17 Hb_001623_400 0.1375086045 - - conserved hypothetical protein [Ricinus communis]
18 Hb_118707_020 0.1409179305 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006538_070 0.1414635612 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
20 Hb_004324_200 0.1415310907 - - PREDICTED: transcription factor TRY-like [Populus euphratica]

Gene co-expression network

sample Hb_002301_420 Hb_002301_420 Hb_018591_010 Hb_018591_010 Hb_002301_420--Hb_018591_010 Hb_164283_010 Hb_164283_010 Hb_002301_420--Hb_164283_010 Hb_012368_080 Hb_012368_080 Hb_002301_420--Hb_012368_080 Hb_000540_030 Hb_000540_030 Hb_002301_420--Hb_000540_030 Hb_006637_040 Hb_006637_040 Hb_002301_420--Hb_006637_040 Hb_018133_110 Hb_018133_110 Hb_002301_420--Hb_018133_110 Hb_018591_010--Hb_164283_010 Hb_008418_010 Hb_008418_010 Hb_018591_010--Hb_008418_010 Hb_018591_010--Hb_006637_040 Hb_004544_070 Hb_004544_070 Hb_018591_010--Hb_004544_070 Hb_002749_070 Hb_002749_070 Hb_018591_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_018591_010--Hb_011145_020 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_004544_070 Hb_164283_010--Hb_006637_040 Hb_164283_010--Hb_002749_070 Hb_164283_010--Hb_011145_020 Hb_003893_100 Hb_003893_100 Hb_012368_080--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_012368_080--Hb_000297_180 Hb_012368_080--Hb_006637_040 Hb_012368_080--Hb_018591_010 Hb_098030_010 Hb_098030_010 Hb_012368_080--Hb_098030_010 Hb_001242_020 Hb_001242_020 Hb_000540_030--Hb_001242_020 Hb_001596_030 Hb_001596_030 Hb_000540_030--Hb_001596_030 Hb_000540_030--Hb_098030_010 Hb_021418_010 Hb_021418_010 Hb_000540_030--Hb_021418_010 Hb_000540_030--Hb_012368_080 Hb_006637_040--Hb_008418_010 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_000797_030 Hb_000797_030 Hb_006637_040--Hb_000797_030 Hb_000032_560 Hb_000032_560 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.7803 2.97358 10.7706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17354 0 0 33.0726 0.536146

CAGE analysis