Hb_002303_050

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig2303: 61091-62737
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02580g
description POPTRDRAFT_655813; hypothetical protein
nr
ID XP_011032809.1
description PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
swissprot
ID Q9LZS0
description Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL PE=2 SV=1
trembl
ID B9HL34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02580g PE=4 SV=2
Gene Ontology
ID GO:0003677
description trihelix transcription factor ptl-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002303_050 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
2 Hb_004474_070 0.0301954299 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
3 Hb_001953_010 0.0677545877 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
4 Hb_005946_200 0.0713246712 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
5 Hb_001675_350 0.0785673384 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
6 Hb_002804_070 0.0797073343 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
7 Hb_128216_010 0.0809935999 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
8 Hb_001022_070 0.0882263383 - - cell wall invertase [Manihot esculenta]
9 Hb_112145_010 0.0933180462 - - kinase, putative [Ricinus communis]
10 Hb_001221_050 0.1071832997 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
11 Hb_004374_170 0.1090085483 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
12 Hb_000000_320 0.1110115318 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
13 Hb_000120_600 0.1136671669 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
14 Hb_000139_390 0.1139011869 - - -
15 Hb_006951_010 0.1213455158 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
16 Hb_004112_070 0.1213810986 - - -
17 Hb_002811_320 0.1269371779 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_003427_020 0.1281120138 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
19 Hb_002186_030 0.1315776269 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
20 Hb_006153_020 0.1323696459 - - vacuolar invertase [Manihot esculenta]

Gene co-expression network

sample Hb_002303_050 Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_002303_050--Hb_004474_070 Hb_001953_010 Hb_001953_010 Hb_002303_050--Hb_001953_010 Hb_005946_200 Hb_005946_200 Hb_002303_050--Hb_005946_200 Hb_001675_350 Hb_001675_350 Hb_002303_050--Hb_001675_350 Hb_002804_070 Hb_002804_070 Hb_002303_050--Hb_002804_070 Hb_128216_010 Hb_128216_010 Hb_002303_050--Hb_128216_010 Hb_004474_070--Hb_001953_010 Hb_004474_070--Hb_128216_010 Hb_004474_070--Hb_001675_350 Hb_004474_070--Hb_002804_070 Hb_000139_390 Hb_000139_390 Hb_004474_070--Hb_000139_390 Hb_000000_320 Hb_000000_320 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002804_070 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_001953_010--Hb_128216_010 Hb_001221_050 Hb_001221_050 Hb_005946_200--Hb_001221_050 Hb_005946_200--Hb_002804_070 Hb_006153_020 Hb_006153_020 Hb_005946_200--Hb_006153_020 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320 Hb_001675_350--Hb_001953_010 Hb_001675_350--Hb_000139_390 Hb_000120_600 Hb_000120_600 Hb_001675_350--Hb_000120_600 Hb_001675_350--Hb_002804_070 Hb_004374_170 Hb_004374_170 Hb_002804_070--Hb_004374_170 Hb_002804_070--Hb_000120_600 Hb_002170_010 Hb_002170_010 Hb_128216_010--Hb_002170_010 Hb_112145_010 Hb_112145_010 Hb_128216_010--Hb_112145_010 Hb_128216_010--Hb_002804_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.42325 0.938858 2.76627 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.367523

CAGE analysis