Hb_002304_020

Information

Type -
Description -
Location Contig2304: 6050-6584
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_020 0.0 - - -
2 Hb_011316_090 0.1558199578 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
3 Hb_006373_040 0.1665033913 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
4 Hb_002188_120 0.1757307402 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
5 Hb_001369_750 0.1822004308 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
6 Hb_001080_090 0.1831807237 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
7 Hb_000281_090 0.1832081965 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
8 Hb_006788_160 0.1870749383 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
9 Hb_008749_040 0.187120298 - - PREDICTED: formin-like protein 20 [Populus euphratica]
10 Hb_004899_260 0.1872275222 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
11 Hb_002276_020 0.1894557551 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
12 Hb_000665_130 0.1932717856 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
13 Hb_000005_260 0.193624048 - - transferase, putative [Ricinus communis]
14 Hb_004635_090 0.1938301798 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
15 Hb_004117_140 0.1944329107 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
16 Hb_001513_010 0.1953191736 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006775_130 0.1973217342 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
18 Hb_148025_010 0.1990996024 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
19 Hb_005271_050 0.1991616117 - - Tubulin beta-8 chain -like protein [Gossypium arboreum]
20 Hb_003663_060 0.2002524199 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]

Gene co-expression network

sample Hb_002304_020 Hb_002304_020 Hb_011316_090 Hb_011316_090 Hb_002304_020--Hb_011316_090 Hb_006373_040 Hb_006373_040 Hb_002304_020--Hb_006373_040 Hb_002188_120 Hb_002188_120 Hb_002304_020--Hb_002188_120 Hb_001369_750 Hb_001369_750 Hb_002304_020--Hb_001369_750 Hb_001080_090 Hb_001080_090 Hb_002304_020--Hb_001080_090 Hb_000281_090 Hb_000281_090 Hb_002304_020--Hb_000281_090 Hb_002276_020 Hb_002276_020 Hb_011316_090--Hb_002276_020 Hb_000665_130 Hb_000665_130 Hb_011316_090--Hb_000665_130 Hb_001951_180 Hb_001951_180 Hb_011316_090--Hb_001951_180 Hb_000261_060 Hb_000261_060 Hb_011316_090--Hb_000261_060 Hb_011316_090--Hb_001369_750 Hb_011316_090--Hb_000281_090 Hb_018292_010 Hb_018292_010 Hb_006373_040--Hb_018292_010 Hb_004117_160 Hb_004117_160 Hb_006373_040--Hb_004117_160 Hb_005463_110 Hb_005463_110 Hb_006373_040--Hb_005463_110 Hb_009193_120 Hb_009193_120 Hb_006373_040--Hb_009193_120 Hb_007919_100 Hb_007919_100 Hb_006373_040--Hb_007919_100 Hb_002414_050 Hb_002414_050 Hb_006373_040--Hb_002414_050 Hb_000111_420 Hb_000111_420 Hb_002188_120--Hb_000111_420 Hb_007922_020 Hb_007922_020 Hb_002188_120--Hb_007922_020 Hb_001546_060 Hb_001546_060 Hb_002188_120--Hb_001546_060 Hb_000631_080 Hb_000631_080 Hb_002188_120--Hb_000631_080 Hb_002188_120--Hb_001369_750 Hb_009658_020 Hb_009658_020 Hb_002188_120--Hb_009658_020 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_001369_750--Hb_000261_060 Hb_001369_750--Hb_002276_020 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_004899_260 Hb_004899_260 Hb_001080_090--Hb_004899_260 Hb_000282_080 Hb_000282_080 Hb_001080_090--Hb_000282_080 Hb_001790_080 Hb_001790_080 Hb_001080_090--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_001080_090--Hb_000130_260 Hb_001589_010 Hb_001589_010 Hb_001080_090--Hb_001589_010 Hb_002758_010 Hb_002758_010 Hb_001080_090--Hb_002758_010 Hb_001205_230 Hb_001205_230 Hb_000281_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_000281_090--Hb_027346_010 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_001008_120 Hb_001008_120 Hb_000281_090--Hb_001008_120 Hb_001004_060 Hb_001004_060 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23474 1.14198 0.0654269 1.17319 0.735857 1.52855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38167 1.70541 0.497035 0.464568 2.45654

CAGE analysis