Hb_002304_030

Information

Type -
Description -
Location Contig2304: 7391-18235
Sequence    

Annotation

kegg
ID rcu:RCOM_1012900
description glutamate receptor 2 plant, putative
nr
ID KDP21046.1
description hypothetical protein JCGZ_21517 [Jatropha curcas]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID A0A067JB61
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_21517 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24206: 7299-17948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_030 0.0 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
2 Hb_005888_020 0.0173276677 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
3 Hb_010288_070 0.022096564 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
4 Hb_000297_190 0.0258379219 - - cell wall invertase [Manihot esculenta]
5 Hb_001170_020 0.0304843246 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005610_070 0.0328710919 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_003050_380 0.0374330298 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
8 Hb_074312_010 0.0390822944 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
9 Hb_005280_020 0.0406543058 - - glycine cleavage system h protein, putative [Ricinus communis]
10 Hb_003032_080 0.0427199433 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005754_050 0.0511125609 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
12 Hb_163566_020 0.0544794038 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_002014_150 0.05529811 - - monooxygenase, putative [Ricinus communis]
14 Hb_011382_010 0.058897003 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
15 Hb_000834_160 0.0608381181 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
16 Hb_000977_250 0.0620260634 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_004464_040 0.0623127246 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
18 Hb_003836_040 0.0624643398 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
19 Hb_003605_170 0.0625660241 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
20 Hb_007187_010 0.0633528393 - - hypothetical protein JCGZ_09061 [Jatropha curcas]

Gene co-expression network

sample Hb_002304_030 Hb_002304_030 Hb_005888_020 Hb_005888_020 Hb_002304_030--Hb_005888_020 Hb_010288_070 Hb_010288_070 Hb_002304_030--Hb_010288_070 Hb_000297_190 Hb_000297_190 Hb_002304_030--Hb_000297_190 Hb_001170_020 Hb_001170_020 Hb_002304_030--Hb_001170_020 Hb_005610_070 Hb_005610_070 Hb_002304_030--Hb_005610_070 Hb_003050_380 Hb_003050_380 Hb_002304_030--Hb_003050_380 Hb_005888_020--Hb_001170_020 Hb_005888_020--Hb_000297_190 Hb_005888_020--Hb_010288_070 Hb_005888_020--Hb_003050_380 Hb_005888_020--Hb_005610_070 Hb_003032_080 Hb_003032_080 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_010288_070--Hb_003050_380 Hb_000297_190--Hb_001170_020 Hb_000297_190--Hb_010288_070 Hb_003836_040 Hb_003836_040 Hb_000297_190--Hb_003836_040 Hb_000297_190--Hb_003050_380 Hb_001170_020--Hb_003050_380 Hb_001170_020--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_001170_020--Hb_000977_250 Hb_005610_070--Hb_074312_010 Hb_011382_010 Hb_011382_010 Hb_005610_070--Hb_011382_010 Hb_002014_150 Hb_002014_150 Hb_005610_070--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_005610_070--Hb_163566_020 Hb_003050_380--Hb_003032_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00521129 20.1668 5.86688 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0112986 0 0 23.8697

CAGE analysis