Hb_002304_040

Information

Type -
Description -
Location Contig2304: 22490-26044
Sequence    

Annotation

kegg
ID rcu:RCOM_0342700
description hypothetical protein
nr
ID XP_012091715.1
description PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21518 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24207: 22651-26075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_040 0.0 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
2 Hb_003141_070 0.0775661393 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
3 Hb_004129_140 0.079406957 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
4 Hb_000300_630 0.0940172912 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
5 Hb_001024_020 0.099343045 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
6 Hb_001482_040 0.0993927758 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006618_120 0.0994072603 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
8 Hb_000062_540 0.1011904534 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009328_020 0.1016674978 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003529_030 0.1017567589 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
11 Hb_027380_220 0.1025571148 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
12 Hb_072922_010 0.1043540658 - - apolipoprotein d, putative [Ricinus communis]
13 Hb_005144_050 0.106647155 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
14 Hb_185255_010 0.1075186152 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_000370_020 0.107666896 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004627_040 0.107859282 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
17 Hb_086085_020 0.1117025505 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
18 Hb_006469_080 0.1119312863 - - conserved hypothetical protein [Ricinus communis]
19 Hb_024128_020 0.1120816554 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
20 Hb_000141_080 0.1123288813 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]

Gene co-expression network

sample Hb_002304_040 Hb_002304_040 Hb_003141_070 Hb_003141_070 Hb_002304_040--Hb_003141_070 Hb_004129_140 Hb_004129_140 Hb_002304_040--Hb_004129_140 Hb_000300_630 Hb_000300_630 Hb_002304_040--Hb_000300_630 Hb_001024_020 Hb_001024_020 Hb_002304_040--Hb_001024_020 Hb_001482_040 Hb_001482_040 Hb_002304_040--Hb_001482_040 Hb_006618_120 Hb_006618_120 Hb_002304_040--Hb_006618_120 Hb_004935_060 Hb_004935_060 Hb_003141_070--Hb_004935_060 Hb_002735_050 Hb_002735_050 Hb_003141_070--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003141_070--Hb_025098_010 Hb_005144_050 Hb_005144_050 Hb_003141_070--Hb_005144_050 Hb_003529_030 Hb_003529_030 Hb_003141_070--Hb_003529_030 Hb_004129_140--Hb_003529_030 Hb_000062_540 Hb_000062_540 Hb_004129_140--Hb_000062_540 Hb_004129_140--Hb_000300_630 Hb_009661_030 Hb_009661_030 Hb_004129_140--Hb_009661_030 Hb_005504_050 Hb_005504_050 Hb_004129_140--Hb_005504_050 Hb_000300_630--Hb_006618_120 Hb_004627_040 Hb_004627_040 Hb_000300_630--Hb_004627_040 Hb_005023_010 Hb_005023_010 Hb_000300_630--Hb_005023_010 Hb_001018_110 Hb_001018_110 Hb_000300_630--Hb_001018_110 Hb_001699_100 Hb_001699_100 Hb_000300_630--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_000300_630--Hb_001633_130 Hb_002289_080 Hb_002289_080 Hb_001024_020--Hb_002289_080 Hb_000172_290 Hb_000172_290 Hb_001024_020--Hb_000172_290 Hb_024128_020 Hb_024128_020 Hb_001024_020--Hb_024128_020 Hb_054865_150 Hb_054865_150 Hb_001024_020--Hb_054865_150 Hb_022833_100 Hb_022833_100 Hb_001024_020--Hb_022833_100 Hb_001024_020--Hb_005144_050 Hb_000295_080 Hb_000295_080 Hb_001482_040--Hb_000295_080 Hb_000352_120 Hb_000352_120 Hb_001482_040--Hb_000352_120 Hb_000370_020 Hb_000370_020 Hb_001482_040--Hb_000370_020 Hb_090051_030 Hb_090051_030 Hb_001482_040--Hb_090051_030 Hb_027380_220 Hb_027380_220 Hb_001482_040--Hb_027380_220 Hb_002298_030 Hb_002298_030 Hb_006618_120--Hb_002298_030 Hb_006618_120--Hb_004627_040 Hb_008246_060 Hb_008246_060 Hb_006618_120--Hb_008246_060 Hb_013575_010 Hb_013575_010 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79045 1.1884 2.4644 7.47384 3.21551 4.24823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75168 4.24499 4.58544 2.04359 4.84061

CAGE analysis