Hb_002304_050

Information

Type -
Description -
Location Contig2304: 27768-31030
Sequence    

Annotation

kegg
ID rcu:RCOM_0342830
description pyruvate kinase, putative (EC:2.7.1.40)
nr
ID XP_002523396.1
description pyruvate kinase, putative [Ricinus communis]
swissprot
ID Q42954
description Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9SBM7
description Pyruvate kinase OS=Ricinus communis GN=RCOM_0342830 PE=3 SV=1
Gene Ontology
ID GO:0000287
description pyruvate cytosolic isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24209: 27818-30883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_050 0.0 - - pyruvate kinase, putative [Ricinus communis]
2 Hb_000753_160 0.0510283292 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
3 Hb_013726_050 0.0610535548 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
4 Hb_002687_180 0.0617005785 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
5 Hb_003449_100 0.0723503141 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
6 Hb_001250_050 0.0756365354 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
7 Hb_002272_240 0.0783900716 - - catalytic, putative [Ricinus communis]
8 Hb_006438_020 0.0810763619 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
9 Hb_011716_010 0.0835291246 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
10 Hb_001279_190 0.0842807186 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
11 Hb_005741_040 0.0857995861 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
12 Hb_007919_110 0.0869361975 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
13 Hb_000258_420 0.0905215948 - - sucrose transporter 2A [Hevea brasiliensis]
14 Hb_003498_100 0.0922728538 - - component of oligomeric golgi complex, putative [Ricinus communis]
15 Hb_002445_030 0.0927275268 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
16 Hb_060094_010 0.0933241337 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
17 Hb_004724_390 0.0933809016 - - PREDICTED: nicalin-1-like [Populus euphratica]
18 Hb_004375_110 0.0938305042 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
19 Hb_000890_160 0.0939016958 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
20 Hb_026198_010 0.0941201089 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002304_050 Hb_002304_050 Hb_000753_160 Hb_000753_160 Hb_002304_050--Hb_000753_160 Hb_013726_050 Hb_013726_050 Hb_002304_050--Hb_013726_050 Hb_002687_180 Hb_002687_180 Hb_002304_050--Hb_002687_180 Hb_003449_100 Hb_003449_100 Hb_002304_050--Hb_003449_100 Hb_001250_050 Hb_001250_050 Hb_002304_050--Hb_001250_050 Hb_002272_240 Hb_002272_240 Hb_002304_050--Hb_002272_240 Hb_000753_160--Hb_001250_050 Hb_007919_110 Hb_007919_110 Hb_000753_160--Hb_007919_110 Hb_000753_160--Hb_003449_100 Hb_000753_160--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_000753_160--Hb_001279_190 Hb_013726_050--Hb_002272_240 Hb_005741_040 Hb_005741_040 Hb_013726_050--Hb_005741_040 Hb_013726_050--Hb_002687_180 Hb_002445_030 Hb_002445_030 Hb_013726_050--Hb_002445_030 Hb_116349_120 Hb_116349_120 Hb_013726_050--Hb_116349_120 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_002687_180--Hb_001250_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_002687_180--Hb_005741_040 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_003449_100--Hb_007919_110 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_000958_080 Hb_000958_080 Hb_003449_100--Hb_000958_080 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_001250_050--Hb_001279_190 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_002272_240--Hb_007919_110 Hb_006120_050 Hb_006120_050 Hb_002272_240--Hb_006120_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9466 24.7633 38.4737 36.8843 10.0355 7.74851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.6205 11.2813 11.8563 19.6287 18.9681

CAGE analysis