Hb_002304_070

Information

Type -
Description -
Location Contig2304: 63325-66612
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_070 0.0 - - -
2 Hb_003467_030 0.12410971 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_001010_070 0.1307501503 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
4 Hb_011386_020 0.1318200158 - - unnamed protein product [Vitis vinifera]
5 Hb_002338_050 0.1369070176 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
6 Hb_001595_080 0.1396450314 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007023_030 0.1421967073 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
8 Hb_007747_210 0.1456687242 - - unnamed protein product [Vitis vinifera]
9 Hb_000631_070 0.1458662956 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
10 Hb_042202_030 0.1464395575 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
11 Hb_020665_010 0.1538664463 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
12 Hb_009270_010 0.1544971559 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
13 Hb_000684_440 0.1574367384 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
14 Hb_000160_320 0.159427451 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
15 Hb_003734_110 0.1598117861 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
16 Hb_001435_030 0.1634607655 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
17 Hb_003544_010 0.163902049 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_003994_110 0.1680813353 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
19 Hb_000976_300 0.1693814718 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
20 Hb_006274_050 0.1716122591 - - hypothetical protein VITISV_022618 [Vitis vinifera]

Gene co-expression network

sample Hb_002304_070 Hb_002304_070 Hb_003467_030 Hb_003467_030 Hb_002304_070--Hb_003467_030 Hb_001010_070 Hb_001010_070 Hb_002304_070--Hb_001010_070 Hb_011386_020 Hb_011386_020 Hb_002304_070--Hb_011386_020 Hb_002338_050 Hb_002338_050 Hb_002304_070--Hb_002338_050 Hb_001595_080 Hb_001595_080 Hb_002304_070--Hb_001595_080 Hb_007023_030 Hb_007023_030 Hb_002304_070--Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_003467_030--Hb_011386_020 Hb_020665_010 Hb_020665_010 Hb_001010_070--Hb_020665_010 Hb_000684_440 Hb_000684_440 Hb_001010_070--Hb_000684_440 Hb_009270_010 Hb_009270_010 Hb_001010_070--Hb_009270_010 Hb_002419_030 Hb_002419_030 Hb_001010_070--Hb_002419_030 Hb_008447_040 Hb_008447_040 Hb_001010_070--Hb_008447_040 Hb_003544_010 Hb_003544_010 Hb_011386_020--Hb_003544_010 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_000337_050 Hb_000337_050 Hb_011386_020--Hb_000337_050 Hb_000019_200 Hb_000019_200 Hb_011386_020--Hb_000019_200 Hb_004480_100 Hb_004480_100 Hb_002338_050--Hb_004480_100 Hb_002338_050--Hb_007023_030 Hb_002338_050--Hb_003467_030 Hb_001242_130 Hb_001242_130 Hb_002338_050--Hb_001242_130 Hb_002338_050--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_002338_050--Hb_000789_200 Hb_002518_120 Hb_002518_120 Hb_001595_080--Hb_002518_120 Hb_032920_050 Hb_032920_050 Hb_001595_080--Hb_032920_050 Hb_001595_080--Hb_003994_110 Hb_000256_200 Hb_000256_200 Hb_001595_080--Hb_000256_200 Hb_001951_180 Hb_001951_180 Hb_001595_080--Hb_001951_180 Hb_007023_030--Hb_002768_060 Hb_007023_030--Hb_004480_100 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.509234 0.581174 0.419438 0.449807 0.755572 1.72304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7905 0.896094 1.72149 2.18233 3.12986

CAGE analysis