Hb_002304_090

Information

Type -
Description -
Location Contig2304: 74905-91908
Sequence    

Annotation

kegg
ID rcu:RCOM_1013010
description ATP-dependent RNA helicase, putative
nr
ID XP_012091720.1
description PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
swissprot
ID Q9H5Z1
description Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2
trembl
ID B9S958
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1013010 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable atp-dependent rna helicase dhx35 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24215: 74893-92133 , PASA_asmbl_24216: 74987-77105
cDNA
(Sanger)
(ID:Location)		 032_I04.ab1: 74893-77115 , 036_F15.ab1: 74893-77729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_090 0.0 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
2 Hb_001172_010 0.0612167015 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
3 Hb_000538_100 0.0617193766 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009627_010 0.0639437393 - - Protein dom-3, putative [Ricinus communis]
5 Hb_007188_070 0.0663266659 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
6 Hb_003935_030 0.066888524 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
7 Hb_000510_310 0.0675117843 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
8 Hb_001454_320 0.0684768771 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
9 Hb_000283_070 0.0698570369 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
10 Hb_008864_110 0.0710374759 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_000173_510 0.0713800853 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
12 Hb_010381_060 0.0720105144 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
13 Hb_002042_140 0.0724449016 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
14 Hb_004994_040 0.0725644973 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_000645_120 0.0725999517 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
16 Hb_000768_110 0.0727971494 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
17 Hb_006252_040 0.0744133422 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
18 Hb_002255_050 0.0752524754 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_008159_020 0.0755394785 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
20 Hb_008695_120 0.0756341654 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002304_090 Hb_002304_090 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_000538_100 Hb_000538_100 Hb_002304_090--Hb_000538_100 Hb_009627_010 Hb_009627_010 Hb_002304_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_001172_010--Hb_009627_010 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_001172_010--Hb_033834_060 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_009627_010--Hb_033834_060 Hb_003362_040 Hb_003362_040 Hb_007188_070--Hb_003362_040 Hb_011174_090 Hb_011174_090 Hb_007188_070--Hb_011174_090 Hb_000645_120 Hb_000645_120 Hb_007188_070--Hb_000645_120 Hb_007188_070--Hb_009627_010 Hb_140171_010 Hb_140171_010 Hb_007188_070--Hb_140171_010 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_003299_070 Hb_003299_070 Hb_003935_030--Hb_003299_070 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000510_310--Hb_000645_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1147 9.09903 6.70576 6.40327 14.8012 16.6959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.71046 4.94724 7.49385 8.27958 4.00247

CAGE analysis