Hb_002304_100

Information

Type -
Description -
Location Contig2304: 98583-101793
Sequence    

Annotation

kegg
ID rcu:RCOM_1013130
description calmodulin, putative
nr
ID KDP21053.1
description hypothetical protein JCGZ_21524 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21524 PE=4 SV=1
Gene Ontology
ID GO:0005509
description sodium calcium exchanger family protein calcium-binding ef hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24217: 98602-101738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_100 0.0 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
2 Hb_000243_340 0.0589203901 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
3 Hb_001645_030 0.066547321 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
4 Hb_000568_020 0.0764138758 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
5 Hb_001247_090 0.0833676986 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
6 Hb_000339_050 0.0926827536 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
7 Hb_002601_040 0.0941241191 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
8 Hb_000834_130 0.0946938544 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000805_270 0.0989287095 - - PREDICTED: expansin-A4 [Gossypium raimondii]
10 Hb_024868_010 0.1031824198 - - protein kinase, putative [Ricinus communis]
11 Hb_003216_140 0.1101964198 - - F-box protein SNE, putative [Ricinus communis]
12 Hb_001025_100 0.1139528319 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
13 Hb_004031_050 0.1184329797 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
14 Hb_005214_050 0.1197264976 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
15 Hb_189208_050 0.1208880376 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
16 Hb_005000_280 0.121120098 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
17 Hb_001769_070 0.1220037933 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
18 Hb_001616_100 0.1240660861 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
19 Hb_002518_020 0.1266236583 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
20 Hb_000162_190 0.1269132375 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]

Gene co-expression network

sample Hb_002304_100 Hb_002304_100 Hb_000243_340 Hb_000243_340 Hb_002304_100--Hb_000243_340 Hb_001645_030 Hb_001645_030 Hb_002304_100--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_002304_100--Hb_000568_020 Hb_001247_090 Hb_001247_090 Hb_002304_100--Hb_001247_090 Hb_000339_050 Hb_000339_050 Hb_002304_100--Hb_000339_050 Hb_002601_040 Hb_002601_040 Hb_002304_100--Hb_002601_040 Hb_000243_340--Hb_002601_040 Hb_000243_340--Hb_001645_030 Hb_000243_340--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_000243_340--Hb_000834_130 Hb_000243_340--Hb_000339_050 Hb_024868_010 Hb_024868_010 Hb_001645_030--Hb_024868_010 Hb_001645_030--Hb_000834_130 Hb_001645_030--Hb_002601_040 Hb_001645_030--Hb_000568_020 Hb_000568_020--Hb_000834_130 Hb_000568_020--Hb_001247_090 Hb_005214_050 Hb_005214_050 Hb_000568_020--Hb_005214_050 Hb_004031_050 Hb_004031_050 Hb_000568_020--Hb_004031_050 Hb_003216_140 Hb_003216_140 Hb_001247_090--Hb_003216_140 Hb_189208_050 Hb_189208_050 Hb_001247_090--Hb_189208_050 Hb_001247_090--Hb_000834_130 Hb_000152_590 Hb_000152_590 Hb_001247_090--Hb_000152_590 Hb_000805_270 Hb_000805_270 Hb_000339_050--Hb_000805_270 Hb_004357_030 Hb_004357_030 Hb_000339_050--Hb_004357_030 Hb_000506_050 Hb_000506_050 Hb_000339_050--Hb_000506_050 Hb_000339_050--Hb_002601_040 Hb_000157_020 Hb_000157_020 Hb_000339_050--Hb_000157_020 Hb_002601_040--Hb_000805_270 Hb_000086_510 Hb_000086_510 Hb_002601_040--Hb_000086_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0546114 3.24868 9.13502 25.9552 0.102313 0.0708757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0198781 0.0312826 0.0297471 7.17377 2.32125

CAGE analysis