Hb_002307_010

Information

Type -
Description -
Location Contig2307: 1990-13679
Sequence    

Annotation

kegg
ID rcu:RCOM_0908980
description hypothetical protein
nr
ID XP_012069768.1
description PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02280 PE=4 SV=1
Gene Ontology
ID GO:0005524
description p-loop nucleoside triphosphate hydrolase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24232: 10576-11889 , PASA_asmbl_24233: 13123-13290 , PASA_asmbl_24234: 12513-13584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_010 0.0 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
2 Hb_001114_120 0.0816322324 - - protein with unknown function [Ricinus communis]
3 Hb_001018_080 0.1111410722 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011537_020 0.1149021672 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
5 Hb_000112_050 0.1166250376 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
6 Hb_000834_040 0.1240661501 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
7 Hb_003847_170 0.1248010593 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
8 Hb_000003_020 0.1276351567 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
9 Hb_000203_080 0.128337941 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
10 Hb_003142_060 0.1288266316 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003847_050 0.1310410033 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
12 Hb_000155_040 0.1313255348 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_000317_220 0.1333587941 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006634_090 0.1351369573 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
15 Hb_007386_030 0.1357835536 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
16 Hb_000739_160 0.1367570577 - - DNA binding protein, putative [Ricinus communis]
17 Hb_011129_020 0.1381655544 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
18 Hb_002739_040 0.1381868838 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
19 Hb_002448_020 0.1425386372 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_000594_160 0.143649405 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_010 Hb_002307_010 Hb_001114_120 Hb_001114_120 Hb_002307_010--Hb_001114_120 Hb_001018_080 Hb_001018_080 Hb_002307_010--Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_002307_010--Hb_011537_020 Hb_000112_050 Hb_000112_050 Hb_002307_010--Hb_000112_050 Hb_000834_040 Hb_000834_040 Hb_002307_010--Hb_000834_040 Hb_003847_170 Hb_003847_170 Hb_002307_010--Hb_003847_170 Hb_001114_120--Hb_000112_050 Hb_000203_080 Hb_000203_080 Hb_001114_120--Hb_000203_080 Hb_003847_050 Hb_003847_050 Hb_001114_120--Hb_003847_050 Hb_002448_020 Hb_002448_020 Hb_001114_120--Hb_002448_020 Hb_007386_030 Hb_007386_030 Hb_001114_120--Hb_007386_030 Hb_001018_080--Hb_011537_020 Hb_008899_030 Hb_008899_030 Hb_001018_080--Hb_008899_030 Hb_003842_010 Hb_003842_010 Hb_001018_080--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_001018_080--Hb_002811_020 Hb_000739_160 Hb_000739_160 Hb_001018_080--Hb_000739_160 Hb_011537_020--Hb_008899_030 Hb_011537_020--Hb_000739_160 Hb_004627_020 Hb_004627_020 Hb_011537_020--Hb_004627_020 Hb_015306_010 Hb_015306_010 Hb_011537_020--Hb_015306_010 Hb_000112_050--Hb_003847_050 Hb_001568_010 Hb_001568_010 Hb_000112_050--Hb_001568_010 Hb_000112_050--Hb_000203_080 Hb_001040_200 Hb_001040_200 Hb_000112_050--Hb_001040_200 Hb_000112_050--Hb_002448_020 Hb_003142_060 Hb_003142_060 Hb_000834_040--Hb_003142_060 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_004324_030 Hb_004324_030 Hb_000834_040--Hb_004324_030 Hb_042509_020 Hb_042509_020 Hb_000834_040--Hb_042509_020 Hb_000003_020 Hb_000003_020 Hb_000834_040--Hb_000003_020 Hb_003847_170--Hb_000112_050 Hb_001470_040 Hb_001470_040 Hb_003847_170--Hb_001470_040 Hb_001963_020 Hb_001963_020 Hb_003847_170--Hb_001963_020 Hb_002475_030 Hb_002475_030 Hb_003847_170--Hb_002475_030 Hb_003847_170--Hb_001114_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360621 3.78449 3.47911 6.21695 0.0521787 0.0339051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329979 0.0649113 0 9.05126 3.33427

CAGE analysis