Hb_002307_020

Information

Type -
Description -
Location Contig2307: 13696-14696
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08740g
description hypothetical protein
nr
ID XP_012069769.1
description PREDICTED: histone H1-like [Jatropha curcas]
swissprot
ID P27806
description Histone H1 OS=Triticum aestivum PE=2 SV=2
trembl
ID A0A067KVR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02279 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24235: 13707-14636
cDNA
(Sanger)
(ID:Location)		 006_F15.ab1: 13833-14636

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_020 0.0 - - PREDICTED: histone H1-like [Jatropha curcas]
2 Hb_006275_060 0.1010330547 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
3 Hb_002007_040 0.1012091647 - - unnamed protein product [Coffea canephora]
4 Hb_000051_080 0.1308192674 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
5 Hb_003784_040 0.1314789288 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
6 Hb_000155_150 0.1370048143 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_001780_080 0.1398797238 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_005504_040 0.1424575217 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000139_280 0.1440422745 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
10 Hb_005725_150 0.1473428517 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
11 Hb_002007_280 0.1553912586 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
12 Hb_010998_050 0.1562497093 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
13 Hb_000684_120 0.1581672013 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
14 Hb_004116_120 0.1587923622 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
15 Hb_030627_070 0.1611469497 - - histone H4 [Zea mays]
16 Hb_036790_030 0.1622650932 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
17 Hb_001478_020 0.1625616938 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
18 Hb_002045_190 0.1629970217 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
19 Hb_000349_230 0.1637560804 - - PREDICTED: protein TPX2 [Jatropha curcas]
20 Hb_010180_030 0.1662253598 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]

Gene co-expression network

sample Hb_002307_020 Hb_002307_020 Hb_006275_060 Hb_006275_060 Hb_002307_020--Hb_006275_060 Hb_002007_040 Hb_002007_040 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080 Hb_006275_060--Hb_000155_150 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_005725_150 Hb_005725_150 Hb_006275_060--Hb_005725_150 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_002007_040--Hb_003784_040 Hb_000051_080--Hb_005725_150 Hb_000051_080--Hb_003784_040 Hb_000051_080--Hb_006275_060 Hb_010180_030 Hb_010180_030 Hb_000051_080--Hb_010180_030 Hb_005504_040 Hb_005504_040 Hb_003784_040--Hb_005504_040 Hb_003784_040--Hb_010180_030 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_005725_150 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_000155_150--Hb_005504_040 Hb_000155_150--Hb_003784_040 Hb_000172_090 Hb_000172_090 Hb_000155_150--Hb_000172_090 Hb_000155_150--Hb_001780_080 Hb_001780_080--Hb_001478_020 Hb_001780_080--Hb_010180_030 Hb_001780_080--Hb_001501_070 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36661 7.92859 199.993 58.4423 4.57934 6.03981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1757 22.3743 8.83941 24.0751 9.17595

CAGE analysis