Hb_002307_030

Information

Type -
Description -
Location Contig2307: 27094-29635
Sequence    

Annotation

kegg
ID rcu:RCOM_0908990
description 40S ribosomal protein S15, putative
nr
ID ADR71251.1
description 40S ribosomal protein S15D [Hevea brasiliensis]
swissprot
ID O65059
description 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1
trembl
ID I3NML4
description 40S ribosomal protein S15D OS=Hevea brasiliensis GN=RPS15D PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s15-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24236: 27096-29599 , PASA_asmbl_24237: 28408-28798
cDNA
(Sanger)
(ID:Location)		 004_L18.ab1: 27098-29493 , 008_G14.ab1: 27098-29413 , 031_A03.ab1: 27098-29480

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_030 0.0 - - 40S ribosomal protein S15D [Hevea brasiliensis]
2 Hb_001243_050 0.0702227442 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
3 Hb_002374_490 0.070995555 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000156_130 0.077237056 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
5 Hb_023732_070 0.0794936412 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
6 Hb_002311_350 0.0810884936 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
7 Hb_000977_080 0.0820890166 - - type II inositol 5-phosphatase, putative [Ricinus communis]
8 Hb_142898_010 0.0832605857 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004645_050 0.0846681639 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
10 Hb_000376_050 0.0851922645 - - polyadenylate-binding protein, putative [Ricinus communis]
11 Hb_024835_030 0.0866152891 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
12 Hb_000923_070 0.086729548 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002603_100 0.0871481709 - - ATATH9, putative [Ricinus communis]
14 Hb_002762_060 0.0872252574 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
15 Hb_007747_090 0.0872628927 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
16 Hb_007672_010 0.0883890895 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
17 Hb_004297_100 0.0893053454 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
18 Hb_143813_010 0.0901113647 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
19 Hb_000045_130 0.0907974839 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
20 Hb_001828_090 0.0919796676 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002307_030 Hb_002307_030 Hb_001243_050 Hb_001243_050 Hb_002307_030--Hb_001243_050 Hb_002374_490 Hb_002374_490 Hb_002307_030--Hb_002374_490 Hb_000156_130 Hb_000156_130 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002311_350 Hb_002311_350 Hb_002307_030--Hb_002311_350 Hb_000977_080 Hb_000977_080 Hb_002307_030--Hb_000977_080 Hb_000376_050 Hb_000376_050 Hb_001243_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_001243_050--Hb_002603_100 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001671_020 Hb_001671_020 Hb_001243_050--Hb_001671_020 Hb_022250_040 Hb_022250_040 Hb_001243_050--Hb_022250_040 Hb_004297_100 Hb_004297_100 Hb_002374_490--Hb_004297_100 Hb_024835_030 Hb_024835_030 Hb_002374_490--Hb_024835_030 Hb_004645_050 Hb_004645_050 Hb_002374_490--Hb_004645_050 Hb_007747_090 Hb_007747_090 Hb_002374_490--Hb_007747_090 Hb_002374_490--Hb_000156_130 Hb_002374_160 Hb_002374_160 Hb_000156_130--Hb_002374_160 Hb_143813_010 Hb_143813_010 Hb_000156_130--Hb_143813_010 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_001454_140 Hb_001454_140 Hb_000156_130--Hb_001454_140 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070 Hb_000380_190 Hb_000380_190 Hb_002311_350--Hb_000380_190 Hb_001477_110 Hb_001477_110 Hb_002311_350--Hb_001477_110 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_002311_350--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_000977_080--Hb_000392_270 Hb_003551_020 Hb_003551_020 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_000977_080--Hb_004645_050 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
545.314 322.608 136.568 136.029 499.112 781.46
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
677.914 992.094 594.148 229.714 62.4587

CAGE analysis