Hb_002307_040

Information

Type -
Description -
Location Contig2307: 31419-32492
Sequence    

Annotation

kegg
ID rcu:RCOM_0909000
description DNA binding protein, putative
nr
ID XP_002517016.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FIX5
description Transcription factor bHLH92 OS=Arabidopsis thaliana GN=BHLH92 PE=2 SV=1
trembl
ID B9RTE7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0909000 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh92

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_040 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001279_050 0.1387491967 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
3 Hb_005686_100 0.1568321884 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000748_100 0.1586913373 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
5 Hb_001433_120 0.1639883839 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
6 Hb_000069_400 0.1654313864 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
7 Hb_002221_010 0.1686713991 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
8 Hb_028487_120 0.1693861857 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
9 Hb_004449_160 0.1696919758 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_114292_010 0.1719733934 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000083_110 0.1721992759 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_001153_230 0.1734132575 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
13 Hb_001040_050 0.1735711848 - - Stem-specific protein TSJT1, putative [Ricinus communis]
14 Hb_002218_050 0.1744713986 - - SSXT family protein isoform 2, partial [Theobroma cacao]
15 Hb_002447_060 0.1762760138 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
16 Hb_183719_010 0.1786912614 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
17 Hb_002079_100 0.1820838254 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
18 Hb_074660_010 0.1821668651 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
19 Hb_000115_190 0.1826615574 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
20 Hb_012633_010 0.1864842759 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_040 Hb_002307_040 Hb_001279_050 Hb_001279_050 Hb_002307_040--Hb_001279_050 Hb_005686_100 Hb_005686_100 Hb_002307_040--Hb_005686_100 Hb_000748_100 Hb_000748_100 Hb_002307_040--Hb_000748_100 Hb_001433_120 Hb_001433_120 Hb_002307_040--Hb_001433_120 Hb_000069_400 Hb_000069_400 Hb_002307_040--Hb_000069_400 Hb_002221_010 Hb_002221_010 Hb_002307_040--Hb_002221_010 Hb_028487_120 Hb_028487_120 Hb_001279_050--Hb_028487_120 Hb_001279_050--Hb_000748_100 Hb_000367_240 Hb_000367_240 Hb_001279_050--Hb_000367_240 Hb_001279_050--Hb_000069_400 Hb_001279_050--Hb_002221_010 Hb_004586_310 Hb_004586_310 Hb_005686_100--Hb_004586_310 Hb_005694_070 Hb_005694_070 Hb_005686_100--Hb_005694_070 Hb_000069_250 Hb_000069_250 Hb_005686_100--Hb_000069_250 Hb_114292_010 Hb_114292_010 Hb_005686_100--Hb_114292_010 Hb_003762_010 Hb_003762_010 Hb_005686_100--Hb_003762_010 Hb_004800_030 Hb_004800_030 Hb_000748_100--Hb_004800_030 Hb_002473_030 Hb_002473_030 Hb_000748_100--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_000748_100--Hb_005649_050 Hb_001454_180 Hb_001454_180 Hb_000748_100--Hb_001454_180 Hb_004963_020 Hb_004963_020 Hb_000748_100--Hb_004963_020 Hb_000165_270 Hb_000165_270 Hb_001433_120--Hb_000165_270 Hb_007218_010 Hb_007218_010 Hb_001433_120--Hb_007218_010 Hb_005854_060 Hb_005854_060 Hb_001433_120--Hb_005854_060 Hb_007157_050 Hb_007157_050 Hb_001433_120--Hb_007157_050 Hb_001680_060 Hb_001680_060 Hb_001433_120--Hb_001680_060 Hb_002447_060 Hb_002447_060 Hb_001433_120--Hb_002447_060 Hb_004449_160 Hb_004449_160 Hb_000069_400--Hb_004449_160 Hb_007120_020 Hb_007120_020 Hb_000069_400--Hb_007120_020 Hb_000069_400--Hb_000748_100 Hb_171646_010 Hb_171646_010 Hb_000069_400--Hb_171646_010 Hb_000115_190 Hb_000115_190 Hb_002221_010--Hb_000115_190 Hb_002693_040 Hb_002693_040 Hb_002221_010--Hb_002693_040 Hb_005162_120 Hb_005162_120 Hb_002221_010--Hb_005162_120 Hb_002218_050 Hb_002218_050 Hb_002221_010--Hb_002218_050 Hb_002221_010--Hb_114292_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120096 0.299566 5.67178 0.631441 0.064013 0.151184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.078714 0 0 0.0251568 0.122684

CAGE analysis