Hb_002307_050

Information

Type -
Description -
Location Contig2307: 34197-38971
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08770g
description POPTRDRAFT_1090119; hypothetical protein
nr
ID XP_012069764.1
description PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYT6
description Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
trembl
ID A0A067KZA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02276 PE=4 SV=1
Gene Ontology
ID GO:0003723
description chloroplastic group iia intron splicing facilitator chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_050 0.0 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
2 Hb_007741_170 0.1582003764 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
3 Hb_002078_430 0.1745793927 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
4 Hb_005298_060 0.1814185163 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
5 Hb_004137_030 0.185353925 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011609_030 0.1857925265 - - conserved hypothetical protein 13 [Hevea brasiliensis]
7 Hb_002619_010 0.1887705774 - - -
8 Hb_000714_020 0.1903725555 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
9 Hb_007545_210 0.1927243846 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
10 Hb_000416_100 0.1929793586 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
11 Hb_000699_020 0.1940352158 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
12 Hb_027380_040 0.1945051637 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
13 Hb_073973_170 0.1961750994 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
14 Hb_004070_030 0.198058902 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_001956_050 0.1994520939 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
16 Hb_001565_100 0.2046627681 - - unnamed protein product [Coffea canephora]
17 Hb_000009_640 0.2049629247 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
18 Hb_087762_010 0.2109220736 - - thioredoxin-like family protein [Hevea brasiliensis]
19 Hb_000028_470 0.2134860371 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
20 Hb_004994_310 0.2143933235 - - Kiwellin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002307_050 Hb_002307_050 Hb_007741_170 Hb_007741_170 Hb_002307_050--Hb_007741_170 Hb_002078_430 Hb_002078_430 Hb_002307_050--Hb_002078_430 Hb_005298_060 Hb_005298_060 Hb_002307_050--Hb_005298_060 Hb_004137_030 Hb_004137_030 Hb_002307_050--Hb_004137_030 Hb_011609_030 Hb_011609_030 Hb_002307_050--Hb_011609_030 Hb_002619_010 Hb_002619_010 Hb_002307_050--Hb_002619_010 Hb_007741_170--Hb_005298_060 Hb_000138_190 Hb_000138_190 Hb_007741_170--Hb_000138_190 Hb_073973_170 Hb_073973_170 Hb_007741_170--Hb_073973_170 Hb_027380_040 Hb_027380_040 Hb_007741_170--Hb_027380_040 Hb_007741_170--Hb_002078_430 Hb_000714_020 Hb_000714_020 Hb_002078_430--Hb_000714_020 Hb_000038_130 Hb_000038_130 Hb_002078_430--Hb_000038_130 Hb_002078_430--Hb_011609_030 Hb_004232_010 Hb_004232_010 Hb_002078_430--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_002078_430--Hb_005741_020 Hb_003636_090 Hb_003636_090 Hb_002078_430--Hb_003636_090 Hb_005298_060--Hb_027380_040 Hb_005298_060--Hb_000138_190 Hb_004738_090 Hb_004738_090 Hb_005298_060--Hb_004738_090 Hb_178968_150 Hb_178968_150 Hb_005298_060--Hb_178968_150 Hb_001140_160 Hb_001140_160 Hb_005298_060--Hb_001140_160 Hb_004137_030--Hb_073973_170 Hb_004137_030--Hb_002619_010 Hb_001623_370 Hb_001623_370 Hb_004137_030--Hb_001623_370 Hb_004137_030--Hb_000714_020 Hb_004994_310 Hb_004994_310 Hb_004137_030--Hb_004994_310 Hb_001956_050 Hb_001956_050 Hb_004137_030--Hb_001956_050 Hb_011609_030--Hb_000714_020 Hb_011609_030--Hb_004232_010 Hb_011609_030--Hb_001623_370 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_002619_010--Hb_000714_020 Hb_002619_010--Hb_073973_170 Hb_004374_010 Hb_004374_010 Hb_002619_010--Hb_004374_010 Hb_002619_010--Hb_005741_020 Hb_000590_090 Hb_000590_090 Hb_002619_010--Hb_000590_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08833 0.0717867 0.114997 0.0412297 0.121891 0.546443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.342096 0.254231 0.170809 0.0712993 0

CAGE analysis