Hb_002307_080

Information

Type -
Description -
Location Contig2307: 42753-43298
Sequence    

Annotation

kegg
ID rcu:RCOM_0909030
description hypothetical protein
nr
ID XP_002517019.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P93829
description PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
trembl
ID B9RTF0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0909030 PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006022_010 0.1174367153 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
3 Hb_054865_020 0.117927864 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
4 Hb_000631_090 0.1202429259 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
5 Hb_052128_010 0.1226179459 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
6 Hb_000045_160 0.1328619694 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
7 Hb_002249_020 0.1333482231 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
8 Hb_000046_600 0.133769449 - - PREDICTED: cullin-1-like [Jatropha curcas]
9 Hb_000640_190 0.1338436335 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
10 Hb_000022_190 0.1348814867 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
11 Hb_023344_140 0.1366942545 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
12 Hb_000470_110 0.1375585427 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
13 Hb_000300_550 0.1377300179 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_004725_030 0.1381314538 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
15 Hb_004116_160 0.1385853663 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
16 Hb_005403_010 0.1393100925 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
17 Hb_000317_110 0.1401654979 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_096819_010 0.1409613286 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
19 Hb_002471_180 0.1412559586 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_005656_080 0.1414390505 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_002307_080 Hb_002307_080 Hb_006022_010 Hb_006022_010 Hb_002307_080--Hb_006022_010 Hb_054865_020 Hb_054865_020 Hb_002307_080--Hb_054865_020 Hb_000631_090 Hb_000631_090 Hb_002307_080--Hb_000631_090 Hb_052128_010 Hb_052128_010 Hb_002307_080--Hb_052128_010 Hb_000045_160 Hb_000045_160 Hb_002307_080--Hb_000045_160 Hb_002249_020 Hb_002249_020 Hb_002307_080--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_006022_010--Hb_000300_550 Hb_000046_600 Hb_000046_600 Hb_006022_010--Hb_000046_600 Hb_000640_190 Hb_000640_190 Hb_006022_010--Hb_000640_190 Hb_007800_020 Hb_007800_020 Hb_006022_010--Hb_007800_020 Hb_001623_110 Hb_001623_110 Hb_006022_010--Hb_001623_110 Hb_006022_010--Hb_002249_020 Hb_005873_020 Hb_005873_020 Hb_054865_020--Hb_005873_020 Hb_004116_160 Hb_004116_160 Hb_054865_020--Hb_004116_160 Hb_054865_020--Hb_000631_090 Hb_054865_020--Hb_052128_010 Hb_004718_060 Hb_004718_060 Hb_054865_020--Hb_004718_060 Hb_000098_240 Hb_000098_240 Hb_054865_020--Hb_000098_240 Hb_000631_090--Hb_000045_160 Hb_000470_110 Hb_000470_110 Hb_000631_090--Hb_000470_110 Hb_011930_100 Hb_011930_100 Hb_000631_090--Hb_011930_100 Hb_000803_090 Hb_000803_090 Hb_000631_090--Hb_000803_090 Hb_001396_240 Hb_001396_240 Hb_052128_010--Hb_001396_240 Hb_001396_020 Hb_001396_020 Hb_052128_010--Hb_001396_020 Hb_004466_050 Hb_004466_050 Hb_052128_010--Hb_004466_050 Hb_000453_030 Hb_000453_030 Hb_052128_010--Hb_000453_030 Hb_000045_160--Hb_000640_190 Hb_000045_160--Hb_011930_100 Hb_033152_090 Hb_033152_090 Hb_000045_160--Hb_033152_090 Hb_088584_010 Hb_088584_010 Hb_000045_160--Hb_088584_010 Hb_000045_160--Hb_002249_020 Hb_000815_310 Hb_000815_310 Hb_000045_160--Hb_000815_310 Hb_006846_170 Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64338 5.87862 8.13696 4.91134 3.1464 5.75478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.582887 0.732811 2.36693 2.38152 4.53376

CAGE analysis