Hb_002307_090

Information

Type -
Description -
Location Contig2307: 45261-55585
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16130g
description POPTRDRAFT_766426; magnesium transporter CorA-like family protein
nr
ID XP_002311660.1
description magnesium transporter CorA-like family protein [Populus trichocarpa]
swissprot
ID Q9FLG2
description Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1
trembl
ID B9HKE1
description Magnesium transporter CorA-like family protein OS=Populus trichocarpa GN=POPTR_0008s16130g PE=4 SV=1
Gene Ontology
ID GO:0015095
description magnesium transporter mrs2-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24240: 51232-55497 , PASA_asmbl_24241: 51232-52120 , PASA_asmbl_24242: 51232-51715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_090 0.0 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
2 Hb_001946_320 0.0610275912 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
3 Hb_001232_130 0.0741771551 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
4 Hb_007229_060 0.0762471075 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
5 Hb_000861_040 0.0852731153 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
6 Hb_005000_290 0.098361762 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
7 Hb_002291_030 0.1061271084 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
8 Hb_012522_030 0.1068116259 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_010589_040 0.1076839365 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000111_280 0.108472552 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
11 Hb_015934_020 0.1095601205 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_002326_030 0.1118759984 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
13 Hb_065500_050 0.1128699651 - - lipoate-protein ligase B, putative [Ricinus communis]
14 Hb_001478_050 0.1141706743 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
15 Hb_003408_030 0.1159892278 - - PREDICTED: protein YIF1B [Jatropha curcas]
16 Hb_001191_100 0.1167103699 - - F-actin capping protein beta subunit [Populus trichocarpa]
17 Hb_008085_040 0.1176457683 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
18 Hb_001437_240 0.1183824747 - - -
19 Hb_002936_050 0.1189753438 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
20 Hb_183963_020 0.1194360974 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_090 Hb_002307_090 Hb_001946_320 Hb_001946_320 Hb_002307_090--Hb_001946_320 Hb_001232_130 Hb_001232_130 Hb_002307_090--Hb_001232_130 Hb_007229_060 Hb_007229_060 Hb_002307_090--Hb_007229_060 Hb_000861_040 Hb_000861_040 Hb_002307_090--Hb_000861_040 Hb_005000_290 Hb_005000_290 Hb_002307_090--Hb_005000_290 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030 Hb_001946_320--Hb_001232_130 Hb_010589_040 Hb_010589_040 Hb_001946_320--Hb_010589_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_001946_320--Hb_007229_060 Hb_000749_250 Hb_000749_250 Hb_001232_130--Hb_000749_250 Hb_003943_030 Hb_003943_030 Hb_001232_130--Hb_003943_030 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_000983_100 Hb_000983_100 Hb_007229_060--Hb_000983_100 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000861_040--Hb_000983_100 Hb_005000_290--Hb_015934_020 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_012522_030 Hb_012522_030 Hb_002291_030--Hb_012522_030 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_002387_060 Hb_002387_060 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9787 2.92774 1.85043 1.44159 15.7777 13.6559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0226 29.197 35.4731 2.73082 2.49136

CAGE analysis