Hb_002307_100

Information

Type -
Description -
Location Contig2307: 61508-66096
Sequence    

Annotation

kegg
ID rcu:RCOM_0909060
description protein transport protein sec23, putative
nr
ID XP_012069760.1
description PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
swissprot
ID Q4PE39
description Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1
trembl
ID A0A067L710
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02273 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24244: 62133-64417 , PASA_asmbl_24245: 65152-65634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_100 0.0 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
2 Hb_175338_030 0.0532859008 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
3 Hb_002477_160 0.0547369095 - - hypothetical protein L484_013453 [Morus notabilis]
4 Hb_007757_110 0.0590755658 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
5 Hb_010175_020 0.0632020694 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000661_050 0.0645468048 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
7 Hb_007558_140 0.0673767378 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
8 Hb_000152_820 0.0698012458 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
9 Hb_005730_030 0.0731063339 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_000619_080 0.0731457708 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
11 Hb_000836_360 0.0739136282 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
12 Hb_000244_250 0.0754016425 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
13 Hb_000953_010 0.0772753633 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
14 Hb_000062_240 0.0774426477 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
15 Hb_002154_030 0.0791914946 - - RNA binding protein, putative [Ricinus communis]
16 Hb_010710_010 0.0793271452 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_011918_080 0.0797269429 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
18 Hb_004837_040 0.0803256381 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
19 Hb_000317_020 0.0809366862 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
20 Hb_000120_950 0.0811590104 - - PREDICTED: protein GRIP [Jatropha curcas]

Gene co-expression network

sample Hb_002307_100 Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002307_100--Hb_175338_030 Hb_002477_160 Hb_002477_160 Hb_002307_100--Hb_002477_160 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_175338_030--Hb_002477_160 Hb_175338_030--Hb_010175_020 Hb_175338_030--Hb_007757_110 Hb_000619_080 Hb_000619_080 Hb_175338_030--Hb_000619_080 Hb_004837_040 Hb_004837_040 Hb_175338_030--Hb_004837_040 Hb_002477_160--Hb_007558_140 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_007757_110--Hb_010175_020 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_010175_020--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_001736_040 Hb_001736_040 Hb_000661_050--Hb_001736_040 Hb_000661_050--Hb_000317_020 Hb_004724_200 Hb_004724_200 Hb_000661_050--Hb_004724_200 Hb_000244_250 Hb_000244_250 Hb_000661_050--Hb_000244_250 Hb_004934_090 Hb_004934_090 Hb_000661_050--Hb_004934_090 Hb_007558_140--Hb_011918_080 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_153258_010 Hb_153258_010 Hb_007558_140--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_007558_140--Hb_000997_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.286 16.2172 5.34348 9.74176 27.451 30.8682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9147 13.9454 33.167 12.0199 8.26579

CAGE analysis