Hb_002307_130

Information

Type -
Description -
Location Contig2307: 89004-89384
Sequence    

Annotation

kegg
ID rcu:RCOM_1252970
description hypothetical protein
nr
ID XP_002522293.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8H4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1252970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24246: 90375-92513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010504_010 0.2846379551 - - 40S ribosomal protein S15C [Hevea brasiliensis]
3 Hb_000350_110 0.2883881154 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
4 Hb_040562_010 0.2995015803 - - -
5 Hb_003108_010 0.3013794591 - - -
6 Hb_007792_010 0.3089600246 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
7 Hb_002239_010 0.3165681197 - - -
8 Hb_000215_170 0.320919636 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
9 Hb_057655_010 0.3216701284 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_000733_020 0.3218597038 - - -
11 Hb_153231_040 0.3323384736 - - -
12 Hb_005496_060 0.3379221957 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
13 Hb_002483_020 0.3418592204 - - -
14 Hb_001863_060 0.3444189582 - - PIF-like transposase [Daucus carota]
15 Hb_001824_060 0.3584493948 - - -
16 Hb_089140_080 0.3631223272 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
17 Hb_003918_040 0.3694560191 - - -
18 Hb_005183_160 0.3700788996 - - -
19 Hb_000340_480 0.3704189532 - - -
20 Hb_004304_050 0.3705734781 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_130 Hb_002307_130 Hb_010504_010 Hb_010504_010 Hb_002307_130--Hb_010504_010 Hb_000350_110 Hb_000350_110 Hb_002307_130--Hb_000350_110 Hb_040562_010 Hb_040562_010 Hb_002307_130--Hb_040562_010 Hb_003108_010 Hb_003108_010 Hb_002307_130--Hb_003108_010 Hb_007792_010 Hb_007792_010 Hb_002307_130--Hb_007792_010 Hb_002239_010 Hb_002239_010 Hb_002307_130--Hb_002239_010 Hb_010504_010--Hb_002239_010 Hb_153231_040 Hb_153231_040 Hb_010504_010--Hb_153231_040 Hb_022212_010 Hb_022212_010 Hb_010504_010--Hb_022212_010 Hb_010504_010--Hb_000350_110 Hb_004304_050 Hb_004304_050 Hb_010504_010--Hb_004304_050 Hb_001863_060 Hb_001863_060 Hb_000350_110--Hb_001863_060 Hb_000350_110--Hb_153231_040 Hb_000350_110--Hb_022212_010 Hb_148908_020 Hb_148908_020 Hb_000350_110--Hb_148908_020 Hb_040562_010--Hb_003108_010 Hb_057655_010 Hb_057655_010 Hb_040562_010--Hb_057655_010 Hb_011179_040 Hb_011179_040 Hb_040562_010--Hb_011179_040 Hb_001811_060 Hb_001811_060 Hb_040562_010--Hb_001811_060 Hb_000340_480 Hb_000340_480 Hb_040562_010--Hb_000340_480 Hb_003108_010--Hb_011179_040 Hb_000548_010 Hb_000548_010 Hb_003108_010--Hb_000548_010 Hb_003320_030 Hb_003320_030 Hb_003108_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_003108_010--Hb_156144_020 Hb_002483_020 Hb_002483_020 Hb_003108_010--Hb_002483_020 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_007792_010--Hb_153231_040 Hb_002231_050 Hb_002231_050 Hb_007792_010--Hb_002231_050 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590 Hb_002239_010--Hb_153231_040 Hb_000281_210 Hb_000281_210 Hb_002239_010--Hb_000281_210 Hb_002239_010--Hb_022212_010 Hb_000088_060 Hb_000088_060 Hb_002239_010--Hb_000088_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193944 0 0 0 0.707496 0.134254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.679503 0 0 0.123207 0

CAGE analysis