Hb_002307_270

Information

Type -
Description -
Location Contig2307: 245301-250613
Sequence    

Annotation

kegg
ID rcu:RCOM_1268730
description ankyrin repeat-containing protein, putative
nr
ID XP_012081926.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067KBC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19273 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24258: 245466-250573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_270 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
2 Hb_000836_380 0.0443763641 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
3 Hb_001411_140 0.0782738588 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
4 Hb_000964_130 0.0896961923 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
5 Hb_001405_160 0.0934631726 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
6 Hb_001217_050 0.0934668666 - - actin binding protein, putative [Ricinus communis]
7 Hb_000173_470 0.0948911964 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
8 Hb_066920_030 0.1013531372 - - PREDICTED: adagio protein 1 [Jatropha curcas]
9 Hb_004435_030 0.103967315 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
10 Hb_010222_070 0.1041367878 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_000017_220 0.1049422345 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
12 Hb_019863_070 0.1063833373 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
13 Hb_112198_010 0.1066009053 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
14 Hb_002818_030 0.1067282746 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
15 Hb_003906_200 0.1086630298 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
16 Hb_003544_110 0.1096969607 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
17 Hb_008770_030 0.1099595839 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
18 Hb_004916_010 0.1104737288 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
19 Hb_000753_230 0.1106476037 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
20 Hb_000347_400 0.1115641038 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002307_270 Hb_002307_270 Hb_000836_380 Hb_000836_380 Hb_002307_270--Hb_000836_380 Hb_001411_140 Hb_001411_140 Hb_002307_270--Hb_001411_140 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_001405_160 Hb_001405_160 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_000836_380--Hb_001405_160 Hb_000017_220 Hb_000017_220 Hb_000836_380--Hb_000017_220 Hb_000028_130 Hb_000028_130 Hb_000836_380--Hb_000028_130 Hb_004435_030 Hb_004435_030 Hb_000836_380--Hb_004435_030 Hb_004916_010 Hb_004916_010 Hb_000836_380--Hb_004916_010 Hb_001411_140--Hb_001405_160 Hb_001411_140--Hb_000836_380 Hb_000152_330 Hb_000152_330 Hb_001411_140--Hb_000152_330 Hb_000951_130 Hb_000951_130 Hb_001411_140--Hb_000951_130 Hb_000753_230 Hb_000753_230 Hb_001411_140--Hb_000753_230 Hb_000808_030 Hb_000808_030 Hb_000964_130--Hb_000808_030 Hb_001999_090 Hb_001999_090 Hb_000964_130--Hb_001999_090 Hb_000866_120 Hb_000866_120 Hb_000964_130--Hb_000866_120 Hb_003747_100 Hb_003747_100 Hb_000964_130--Hb_003747_100 Hb_000964_130--Hb_000017_220 Hb_002007_160 Hb_002007_160 Hb_000964_130--Hb_002007_160 Hb_001473_110 Hb_001473_110 Hb_001405_160--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_001405_160--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001405_160--Hb_000347_400 Hb_001405_160--Hb_000017_220 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_010222_070 Hb_010222_070 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_000599_190 Hb_000599_190 Hb_001217_050--Hb_000599_190 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0138 29.8435 6.06351 21.238 8.49573 10.2572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.982 16.4894 19.335 15.7588 17.426

CAGE analysis