Hb_002309_020

Information

Type -
Description -
Location Contig2309: 24878-27014
Sequence    

Annotation

kegg
ID rcu:RCOM_1582300
description ATP binding protein, putative
nr
ID KDP22226.1
description hypothetical protein JCGZ_26057 [Jatropha curcas]
swissprot
ID Q3EDL4
description Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2
trembl
ID A0A067JEF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26057 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g01540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002309_020 0.0 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
2 Hb_002092_060 0.0440655201 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000005_290 0.0492394827 - - Serine carboxypeptidase, putative [Ricinus communis]
4 Hb_015175_070 0.0695845914 - - cysteine protease, putative [Ricinus communis]
5 Hb_001975_110 0.0740348168 - - -
6 Hb_005295_030 0.076909178 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
7 Hb_001496_150 0.0787873711 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
8 Hb_000317_380 0.0795759035 - - Peroxidase 47 precursor, putative [Ricinus communis]
9 Hb_002686_220 0.0824108375 - - PREDICTED: expansin-A15-like [Jatropha curcas]
10 Hb_002783_100 0.0865883344 - - Zeamatin precursor, putative [Ricinus communis]
11 Hb_000310_050 0.0871735858 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_051212_020 0.0907783486 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
13 Hb_029883_010 0.0941610136 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_004899_230 0.0957768313 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
15 Hb_000724_060 0.0990925071 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
16 Hb_000934_120 0.1011392415 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
17 Hb_001775_140 0.1016678083 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
18 Hb_006573_120 0.104594639 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
19 Hb_007122_020 0.1064520638 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_001818_010 0.107009124 - - Disease resistance response protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002309_020 Hb_002309_020 Hb_002092_060 Hb_002092_060 Hb_002309_020--Hb_002092_060 Hb_000005_290 Hb_000005_290 Hb_002309_020--Hb_000005_290 Hb_015175_070 Hb_015175_070 Hb_002309_020--Hb_015175_070 Hb_001975_110 Hb_001975_110 Hb_002309_020--Hb_001975_110 Hb_005295_030 Hb_005295_030 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_002092_060--Hb_015175_070 Hb_002092_060--Hb_005295_030 Hb_002092_060--Hb_000005_290 Hb_000310_050 Hb_000310_050 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_000005_290--Hb_001975_110 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_004899_230 Hb_004899_230 Hb_000005_290--Hb_004899_230 Hb_002783_100 Hb_002783_100 Hb_000005_290--Hb_002783_100 Hb_000336_120 Hb_000336_120 Hb_015175_070--Hb_000336_120 Hb_015175_070--Hb_000310_050 Hb_015175_070--Hb_005295_030 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_001975_110--Hb_000317_380 Hb_001975_110--Hb_002783_100 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_004162_200 Hb_004162_200 Hb_005295_030--Hb_004162_200 Hb_005295_030--Hb_004899_230 Hb_153258_030 Hb_153258_030 Hb_001496_150--Hb_153258_030 Hb_000227_290 Hb_000227_290 Hb_001496_150--Hb_000227_290 Hb_018910_010 Hb_018910_010 Hb_001496_150--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_001496_150--Hb_000049_190 Hb_005665_100 Hb_005665_100 Hb_001496_150--Hb_005665_100 Hb_001568_040 Hb_001568_040 Hb_001496_150--Hb_001568_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0288216 0.232177 0.841404 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.162485

CAGE analysis