Hb_002309_030

Information

Type -
Description -
Location Contig2309: 38570-39073
Sequence    

Annotation

kegg
ID tcc:TCM_015248
description Glycerol dehydrogenase large subunit, putative
nr
ID XP_007038807.1
description Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
swissprot
ID Q9LE54
description Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
trembl
ID A0A061G1P8
description Glycerol dehydrogenase large subunit, putative OS=Theobroma cacao GN=TCM_015248 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002309_030 0.0 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
2 Hb_006469_110 0.116975691 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
3 Hb_003333_070 0.1464035064 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
4 Hb_004308_010 0.1630378311 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
5 Hb_008535_020 0.172822919 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
6 Hb_000188_080 0.1730314707 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
7 Hb_002186_120 0.1811093405 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
8 Hb_018671_010 0.1813352126 - - -
9 Hb_001247_050 0.1824320421 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
10 Hb_000277_040 0.1855526084 - - -
11 Hb_178968_010 0.1933942513 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
12 Hb_000203_120 0.1954208935 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000224_050 0.1959736141 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000381_140 0.1962620605 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
15 Hb_000053_150 0.1969532533 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
16 Hb_008727_090 0.1977631636 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
17 Hb_000099_110 0.19885124 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
18 Hb_000203_110 0.199029193 - - -
19 Hb_003540_010 0.1994819042 - - -
20 Hb_012545_020 0.2003292694 - - PREDICTED: uncharacterized protein LOC105633903 [Jatropha curcas]

Gene co-expression network

sample Hb_002309_030 Hb_002309_030 Hb_006469_110 Hb_006469_110 Hb_002309_030--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_002309_030--Hb_003333_070 Hb_004308_010 Hb_004308_010 Hb_002309_030--Hb_004308_010 Hb_008535_020 Hb_008535_020 Hb_002309_030--Hb_008535_020 Hb_000188_080 Hb_000188_080 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120 Hb_000347_520 Hb_000347_520 Hb_006469_110--Hb_000347_520 Hb_122079_010 Hb_122079_010 Hb_006469_110--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_006469_110--Hb_061335_010 Hb_000053_150 Hb_000053_150 Hb_006469_110--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_006469_110--Hb_010812_080 Hb_003333_070--Hb_000188_080 Hb_005015_090 Hb_005015_090 Hb_003333_070--Hb_005015_090 Hb_003333_070--Hb_004308_010 Hb_003333_070--Hb_008535_020 Hb_005914_190 Hb_005914_190 Hb_003333_070--Hb_005914_190 Hb_000577_060 Hb_000577_060 Hb_004308_010--Hb_000577_060 Hb_000753_270 Hb_000753_270 Hb_004308_010--Hb_000753_270 Hb_004308_010--Hb_000188_080 Hb_010866_020 Hb_010866_020 Hb_004308_010--Hb_010866_020 Hb_001247_050 Hb_001247_050 Hb_008535_020--Hb_001247_050 Hb_001277_390 Hb_001277_390 Hb_008535_020--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_008535_020--Hb_118941_010 Hb_000224_070 Hb_000224_070 Hb_008535_020--Hb_000224_070 Hb_002701_200 Hb_002701_200 Hb_008535_020--Hb_002701_200 Hb_005976_030 Hb_005976_030 Hb_008535_020--Hb_005976_030 Hb_000188_080--Hb_008535_020 Hb_000325_090 Hb_000325_090 Hb_000188_080--Hb_000325_090 Hb_000188_080--Hb_001247_050 Hb_000566_060 Hb_000566_060 Hb_000188_080--Hb_000566_060 Hb_018671_010 Hb_018671_010 Hb_002186_120--Hb_018671_010 Hb_000277_040 Hb_000277_040 Hb_002186_120--Hb_000277_040 Hb_178968_010 Hb_178968_010 Hb_002186_120--Hb_178968_010 Hb_002186_120--Hb_000053_150 Hb_000224_050 Hb_000224_050 Hb_002186_120--Hb_000224_050 Hb_003540_010 Hb_003540_010 Hb_002186_120--Hb_003540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.186274 0.449217 5.07643 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383959 0 0 0 0

CAGE analysis