Hb_002309_050

Information

Type -
Description -
Location Contig2309: 51372-53487
Sequence    

Annotation

kegg
ID rcu:RCOM_1582530
description beta-carotene hydroxylase, putative
nr
ID XP_002513654.1
description beta-carotene hydroxylase, putative [Ricinus communis]
swissprot
ID Q9SZZ8
description Beta-carotene 3-hydroxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BETA-OHASE 1 PE=1 SV=1
trembl
ID B9RIT5
description Beta-carotene hydroxylase, putative OS=Ricinus communis GN=RCOM_1582530 PE=4 SV=1
Gene Ontology
ID GO:0005506
description beta-carotene hydroxylase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24276: 51406-53464 , PASA_asmbl_24277: 52788-53170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002309_050 0.0 - - beta-carotene hydroxylase, putative [Ricinus communis]
2 Hb_004787_040 0.1041269873 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003680_140 0.164823616 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
4 Hb_000352_200 0.1656841749 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
5 Hb_170426_010 0.1693975983 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
6 Hb_027654_080 0.1746589468 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
7 Hb_004089_020 0.1878508636 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
8 Hb_000771_060 0.1914167777 - - PREDICTED: spermine synthase [Jatropha curcas]
9 Hb_000529_280 0.1919532108 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
10 Hb_004931_110 0.1952955783 - - inorganic phosphate transporter, putative [Ricinus communis]
11 Hb_000057_140 0.2022142646 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
12 Hb_000815_290 0.2026716641 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_093458_010 0.204512212 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
14 Hb_001975_030 0.2107879651 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
15 Hb_003462_160 0.2116972465 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
16 Hb_000189_540 0.2136405537 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
17 Hb_002671_090 0.2167921348 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
18 Hb_012340_060 0.2184280654 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000025_370 0.2186264312 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
20 Hb_001376_060 0.2213650068 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002309_050 Hb_002309_050 Hb_004787_040 Hb_004787_040 Hb_002309_050--Hb_004787_040 Hb_003680_140 Hb_003680_140 Hb_002309_050--Hb_003680_140 Hb_000352_200 Hb_000352_200 Hb_002309_050--Hb_000352_200 Hb_170426_010 Hb_170426_010 Hb_002309_050--Hb_170426_010 Hb_027654_080 Hb_027654_080 Hb_002309_050--Hb_027654_080 Hb_004089_020 Hb_004089_020 Hb_002309_050--Hb_004089_020 Hb_004787_040--Hb_170426_010 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_020805_060 Hb_020805_060 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_000189_540 Hb_000189_540 Hb_004787_040--Hb_000189_540 Hb_001975_030 Hb_001975_030 Hb_003680_140--Hb_001975_030 Hb_002603_110 Hb_002603_110 Hb_003680_140--Hb_002603_110 Hb_006836_030 Hb_006836_030 Hb_003680_140--Hb_006836_030 Hb_004931_110 Hb_004931_110 Hb_003680_140--Hb_004931_110 Hb_000317_420 Hb_000317_420 Hb_003680_140--Hb_000317_420 Hb_000352_200--Hb_000189_540 Hb_000152_210 Hb_000152_210 Hb_000352_200--Hb_000152_210 Hb_000155_090 Hb_000155_090 Hb_000352_200--Hb_000155_090 Hb_052764_070 Hb_052764_070 Hb_000352_200--Hb_052764_070 Hb_000352_200--Hb_004787_040 Hb_170426_010--Hb_004679_060 Hb_170426_010--Hb_004089_020 Hb_170426_010--Hb_020805_060 Hb_170426_010--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_170426_010--Hb_000011_300 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_012022_140 Hb_012022_140 Hb_004089_020--Hb_012022_140 Hb_000815_290 Hb_000815_290 Hb_004089_020--Hb_000815_290 Hb_000739_140 Hb_000739_140 Hb_004089_020--Hb_000739_140 Hb_005054_260 Hb_005054_260 Hb_004089_020--Hb_005054_260 Hb_000005_300 Hb_000005_300 Hb_004089_020--Hb_000005_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.310543 18.0869 24.6594 20.2737 0.0862996 0.24698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.45504 41.9565 19.0219 11.8381 12.5662

CAGE analysis