Hb_002311_010

Information

Type -
Description -
Location Contig2311: 2887-4269
Sequence    

Annotation

kegg
ID rcu:RCOM_0999860
description chitinase, putative (EC:3.2.1.14)
nr
ID XP_012084037.1
description PREDICTED: chitinase-like protein 2 [Jatropha curcas]
swissprot
ID Q9LSP9
description Chitinase-like protein 2 OS=Arabidopsis thaliana GN=CTL2 PE=2 SV=1
trembl
ID A0A067K6J6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18970 PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24281: 2830-4521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_010 0.0 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
2 Hb_038927_020 0.0334266816 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
3 Hb_001935_060 0.046810049 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
4 Hb_007281_010 0.0472290032 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_001377_220 0.0489906717 - - dopamine beta-monooxygenase, putative [Ricinus communis]
6 Hb_000416_020 0.0523924871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010166_010 0.0552753975 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
8 Hb_001712_030 0.0637149643 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
9 Hb_002739_140 0.0655192361 - - PREDICTED: protein TPX2 [Jatropha curcas]
10 Hb_003972_070 0.0672227336 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
11 Hb_001014_180 0.0677028228 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
12 Hb_026198_080 0.068355123 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
13 Hb_000462_040 0.0706377996 - - ATSMC2, putative [Ricinus communis]
14 Hb_002078_180 0.0754701235 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
15 Hb_000165_260 0.0758186899 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
16 Hb_004920_150 0.0760597876 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000328_030 0.0775472115 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
18 Hb_000776_090 0.0777340721 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
19 Hb_158092_090 0.0789159108 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000086_490 0.080123759 - - cellulose synthase [Populus tomentosa]

Gene co-expression network

sample Hb_002311_010 Hb_002311_010 Hb_038927_020 Hb_038927_020 Hb_002311_010--Hb_038927_020 Hb_001935_060 Hb_001935_060 Hb_002311_010--Hb_001935_060 Hb_007281_010 Hb_007281_010 Hb_002311_010--Hb_007281_010 Hb_001377_220 Hb_001377_220 Hb_002311_010--Hb_001377_220 Hb_000416_020 Hb_000416_020 Hb_002311_010--Hb_000416_020 Hb_010166_010 Hb_010166_010 Hb_002311_010--Hb_010166_010 Hb_038927_020--Hb_000416_020 Hb_038927_020--Hb_001935_060 Hb_038927_020--Hb_007281_010 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140 Hb_001935_060--Hb_001377_220 Hb_001935_060--Hb_010166_010 Hb_002078_180 Hb_002078_180 Hb_001935_060--Hb_002078_180 Hb_005686_040 Hb_005686_040 Hb_001935_060--Hb_005686_040 Hb_001014_180 Hb_001014_180 Hb_007281_010--Hb_001014_180 Hb_000462_040 Hb_000462_040 Hb_007281_010--Hb_000462_040 Hb_034507_030 Hb_034507_030 Hb_007281_010--Hb_034507_030 Hb_001712_030 Hb_001712_030 Hb_007281_010--Hb_001712_030 Hb_001377_220--Hb_010166_010 Hb_002662_070 Hb_002662_070 Hb_001377_220--Hb_002662_070 Hb_001377_220--Hb_005686_040 Hb_001377_220--Hb_002078_180 Hb_000416_020--Hb_001935_060 Hb_000416_020--Hb_010166_010 Hb_158092_090 Hb_158092_090 Hb_000416_020--Hb_158092_090 Hb_000416_020--Hb_001377_220 Hb_050514_030 Hb_050514_030 Hb_010166_010--Hb_050514_030 Hb_010166_010--Hb_005686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244039 9.2863 15.8098 202.934 0.238459 0.0554648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0440201 0 0.65633 188.876

CAGE analysis