Hb_002311_030

Information

Type -
Description -
Location Contig2311: 18241-20544
Sequence    

Annotation

kegg
ID rcu:RCOM_0999820
description hypothetical protein
nr
ID XP_002519193.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0999820 PE=4 SV=1
Gene Ontology
ID GO:0007623
description camp-regulated phosphoprotein 19-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24285: 18252-20555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004162_200 0.0638679485 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
3 Hb_007113_060 0.0696815241 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
4 Hb_002740_140 0.0711628758 - - hypothetical protein L484_022679 [Morus notabilis]
5 Hb_009151_010 0.0735825629 - - Peroxidase 3 [Morus notabilis]
6 Hb_057862_010 0.0795143651 - - protein binding protein, putative [Ricinus communis]
7 Hb_162450_010 0.082324265 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_006922_120 0.0845859749 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
9 Hb_005116_150 0.0891346759 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
10 Hb_000140_320 0.0901186058 - - delta-8 sphingolipid desaturase [Vernicia fordii]
11 Hb_000816_140 0.091108935 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
12 Hb_050898_040 0.0939611715 - - -
13 Hb_002067_070 0.0940591462 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
14 Hb_031984_020 0.0957649424 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004218_270 0.0965959899 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
16 Hb_000531_030 0.0969687741 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006846_040 0.0976131944 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
18 Hb_006977_010 0.0983178181 - - unnamed protein product [Vitis vinifera]
19 Hb_093084_030 0.0990311891 - - oleosin2 [Plukenetia volubilis]
20 Hb_013749_040 0.0992106064 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_030 Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_002311_030--Hb_004162_200 Hb_007113_060 Hb_007113_060 Hb_002311_030--Hb_007113_060 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_009151_010 Hb_009151_010 Hb_002311_030--Hb_009151_010 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002311_030--Hb_162450_010 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_004162_200--Hb_007113_060 Hb_005295_030 Hb_005295_030 Hb_004162_200--Hb_005295_030 Hb_004162_200--Hb_009151_010 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040 Hb_006922_120 Hb_006922_120 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_162450_010 Hb_002740_140--Hb_057862_010 Hb_002740_140--Hb_162450_010 Hb_049955_010 Hb_049955_010 Hb_002740_140--Hb_049955_010 Hb_000815_050 Hb_000815_050 Hb_002740_140--Hb_000815_050 Hb_002740_140--Hb_050898_040 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_009151_010--Hb_002067_070 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030 Hb_185608_010 Hb_185608_010 Hb_057862_010--Hb_185608_010 Hb_057862_010--Hb_162450_010 Hb_057862_010--Hb_049955_010 Hb_011344_040 Hb_011344_040 Hb_057862_010--Hb_011344_040 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_162450_010--Hb_093084_030 Hb_162450_010--Hb_185608_010 Hb_005532_080 Hb_005532_080 Hb_162450_010--Hb_005532_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.341762 13.4393 42.9889 0 0.0594674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.202445 0.766437 16.282

CAGE analysis