Hb_002311_060

Information

Type -
Description -
Location Contig2311: 27628-29522
Sequence    

Annotation

kegg
ID rcu:RCOM_0999780
description hypothetical protein
nr
ID XP_012084027.1
description PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
swissprot
ID Q9FJ06
description Protein trichome birefringence-like 4 OS=Arabidopsis thaliana GN=TBL4 PE=3 SV=1
trembl
ID B9RZM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0999780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_060 0.0 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
2 Hb_004228_090 0.1049144145 - - -
3 Hb_134015_010 0.2365511334 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_008778_010 0.2988347715 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_021576_020 0.2997934635 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
6 Hb_003680_210 0.3076124624 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
7 Hb_000816_270 0.3099504915 - - -
8 Hb_006911_050 0.3237748331 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
9 Hb_001554_010 0.3244297237 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
10 Hb_000820_050 0.3247276655 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
11 Hb_001366_120 0.3291424136 - - unknown [Zea mays]
12 Hb_008494_050 0.3369352458 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_004899_060 0.3397051181 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
14 Hb_001369_380 0.3441685705 - - F-box family protein, putative [Theobroma cacao]
15 Hb_032717_070 0.3471437542 - - PREDICTED: mucin-2-like [Jatropha curcas]
16 Hb_005062_080 0.3474348322 - - MLO-like protein 4 [Gossypium arboreum]
17 Hb_003464_070 0.3480951412 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
18 Hb_000579_020 0.3488714375 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
19 Hb_003925_020 0.3496805007 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
20 Hb_000566_030 0.3498459649 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_002311_060 Hb_002311_060 Hb_004228_090 Hb_004228_090 Hb_002311_060--Hb_004228_090 Hb_134015_010 Hb_134015_010 Hb_002311_060--Hb_134015_010 Hb_008778_010 Hb_008778_010 Hb_002311_060--Hb_008778_010 Hb_021576_020 Hb_021576_020 Hb_002311_060--Hb_021576_020 Hb_003680_210 Hb_003680_210 Hb_002311_060--Hb_003680_210 Hb_000816_270 Hb_000816_270 Hb_002311_060--Hb_000816_270 Hb_004228_090--Hb_000816_270 Hb_004228_090--Hb_134015_010 Hb_004228_090--Hb_008778_010 Hb_006911_050 Hb_006911_050 Hb_004228_090--Hb_006911_050 Hb_001554_010 Hb_001554_010 Hb_004228_090--Hb_001554_010 Hb_134015_010--Hb_021576_020 Hb_000080_160 Hb_000080_160 Hb_134015_010--Hb_000080_160 Hb_079751_010 Hb_079751_010 Hb_134015_010--Hb_079751_010 Hb_032717_070 Hb_032717_070 Hb_134015_010--Hb_032717_070 Hb_000334_180 Hb_000334_180 Hb_008778_010--Hb_000334_180 Hb_004899_060 Hb_004899_060 Hb_008778_010--Hb_004899_060 Hb_002035_080 Hb_002035_080 Hb_008778_010--Hb_002035_080 Hb_005976_050 Hb_005976_050 Hb_008778_010--Hb_005976_050 Hb_089206_010 Hb_089206_010 Hb_008778_010--Hb_089206_010 Hb_000566_030 Hb_000566_030 Hb_008778_010--Hb_000566_030 Hb_021576_020--Hb_001554_010 Hb_002998_070 Hb_002998_070 Hb_021576_020--Hb_002998_070 Hb_007904_240 Hb_007904_240 Hb_021576_020--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_021576_020--Hb_000069_770 Hb_005306_010 Hb_005306_010 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_003972_060 Hb_003972_060 Hb_003680_210--Hb_003972_060 Hb_028872_160 Hb_028872_160 Hb_003680_210--Hb_028872_160 Hb_027746_020 Hb_027746_020 Hb_003680_210--Hb_027746_020 Hb_003464_070 Hb_003464_070 Hb_003680_210--Hb_003464_070 Hb_002685_150 Hb_002685_150 Hb_003680_210--Hb_002685_150 Hb_003680_210--Hb_000926_100 Hb_007125_010 Hb_007125_010 Hb_000816_270--Hb_007125_010 Hb_161929_010 Hb_161929_010 Hb_000816_270--Hb_161929_010 Hb_003760_040 Hb_003760_040 Hb_000816_270--Hb_003760_040 Hb_001277_310 Hb_001277_310 Hb_000816_270--Hb_001277_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0474579 0 0.0564687 0.136567 0.0238105 0.026739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.156893 0.137845 0

CAGE analysis