Hb_002311_090

Information

Type -
Description -
Location Contig2311: 41621-46002
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10800g
description POPTRDRAFT_765951; hypothetical protein
nr
ID XP_012084024.1
description PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18962 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24294: 42959-43049 , PASA_asmbl_24295: 43064-43248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_090 0.0 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
2 Hb_101133_050 0.0808170744 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
3 Hb_000567_290 0.0944032716 - - hypothetical protein RCOM_0303940 [Ricinus communis]
4 Hb_007632_210 0.1034401261 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
5 Hb_012150_040 0.1090168494 - - conserved hypothetical protein [Ricinus communis]
6 Hb_124677_050 0.1099444164 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000661_150 0.1145623773 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
8 Hb_000190_220 0.1156938459 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
9 Hb_003228_050 0.1218908228 - - chromomethylase [Hevea brasiliensis]
10 Hb_001584_360 0.1225632391 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
11 Hb_007474_020 0.1232862229 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_033041_010 0.1235047045 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
13 Hb_000317_120 0.1247065791 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
14 Hb_003813_110 0.125546289 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005183_150 0.1265878472 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_000956_050 0.1265882855 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
17 Hb_005542_150 0.1266017868 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
18 Hb_000189_350 0.1280782067 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
19 Hb_033152_060 0.12855399 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
20 Hb_007632_080 0.1289110629 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_090 Hb_002311_090 Hb_101133_050 Hb_101133_050 Hb_002311_090--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_007632_210 Hb_007632_210 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_124677_050 Hb_124677_050 Hb_002311_090--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_002311_090--Hb_000661_150 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_003813_110 Hb_003813_110 Hb_000567_290--Hb_003813_110 Hb_001410_030 Hb_001410_030 Hb_000567_290--Hb_001410_030 Hb_000418_040 Hb_000418_040 Hb_000567_290--Hb_000418_040 Hb_000567_290--Hb_101133_050 Hb_000567_290--Hb_000661_150 Hb_005183_150 Hb_005183_150 Hb_007632_210--Hb_005183_150 Hb_007632_210--Hb_124677_050 Hb_007632_210--Hb_000661_150 Hb_003228_050 Hb_003228_050 Hb_007632_210--Hb_003228_050 Hb_007632_210--Hb_101133_050 Hb_012150_040--Hb_000317_120 Hb_001377_370 Hb_001377_370 Hb_012150_040--Hb_001377_370 Hb_012150_040--Hb_101133_050 Hb_012150_040--Hb_000661_150 Hb_000742_180 Hb_000742_180 Hb_012150_040--Hb_000742_180 Hb_072201_010 Hb_072201_010 Hb_012150_040--Hb_072201_010 Hb_003360_010 Hb_003360_010 Hb_124677_050--Hb_003360_010 Hb_124677_050--Hb_005183_150 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_124677_050--Hb_003228_050 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000661_150--Hb_000418_040 Hb_000661_150--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0291138 0.142639 2.42042 1.40504 0.0137539 0.0184055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109089 0.03679 0.0234314 0.282226 0.182921

CAGE analysis