Hb_002311_130

Information

Type -
Description -
Location Contig2311: 58460-62652
Sequence    

Annotation

kegg
ID rcu:RCOM_0999470
description importin alpha, putative
nr
ID XP_012084020.1
description PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
swissprot
ID F4JL11
description Importin subunit alpha-2 OS=Arabidopsis thaliana GN=IMPA2 PE=1 SV=1
trembl
ID A0A067JV78
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_18956 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24303: 58476-62960
cDNA
(Sanger)
(ID:Location)		 004_C22.ab1: 58476-59618 , 053_J23.ab1: 58476-59640

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_130 0.0 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
2 Hb_002805_090 0.0677302287 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_002400_060 0.0765269799 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
4 Hb_007313_040 0.0792627971 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
5 Hb_001998_220 0.0865950795 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
6 Hb_001473_170 0.091400481 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_005000_090 0.0918582158 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
8 Hb_010381_020 0.0963541445 - - Endosomal P24A protein precursor, putative [Ricinus communis]
9 Hb_102763_010 0.0964555058 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
10 Hb_000809_250 0.096795032 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
11 Hb_004884_090 0.0985908276 - - importin beta-1, putative [Ricinus communis]
12 Hb_001366_270 0.1004637481 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
13 Hb_005116_140 0.1017633447 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
14 Hb_000540_100 0.103240285 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
15 Hb_000701_030 0.1032925765 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
16 Hb_004030_060 0.1033422375 - - receptor protein kinase zmpk1, putative [Ricinus communis]
17 Hb_007897_030 0.1040970922 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
18 Hb_009476_120 0.1055235806 - - Clathrin heavy chain 1 [Glycine soja]
19 Hb_001511_180 0.1061518721 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
20 Hb_000167_120 0.1063672223 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_130 Hb_002311_130 Hb_002805_090 Hb_002805_090 Hb_002311_130--Hb_002805_090 Hb_002400_060 Hb_002400_060 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_001998_220 Hb_001998_220 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_005116_140 Hb_005116_140 Hb_002805_090--Hb_005116_140 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_002805_090--Hb_001998_220 Hb_000025_500 Hb_000025_500 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080 Hb_001801_020 Hb_001801_020 Hb_002400_060--Hb_001801_020 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_009674_050 Hb_009674_050 Hb_002400_060--Hb_009674_050 Hb_033642_060 Hb_033642_060 Hb_002400_060--Hb_033642_060 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_001998_150 Hb_001998_150 Hb_007313_040--Hb_001998_150 Hb_007313_040--Hb_001473_170 Hb_000167_120 Hb_000167_120 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_007313_040--Hb_000025_500 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_021977_010 Hb_021977_010 Hb_001998_220--Hb_021977_010 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_001998_220--Hb_005000_090 Hb_001414_010 Hb_001414_010 Hb_001998_220--Hb_001414_010 Hb_010390_010 Hb_010390_010 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_000494_030 Hb_000494_030 Hb_001473_170--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_001473_170--Hb_004030_060 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72646 11.3305 7.54833 17.9427 3.23146 5.33927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28887 3.04147 5.06895 10.6551 18.2491

CAGE analysis