Hb_002311_150

Information

Type -
Description -
Location Contig2311: 73983-77087
Sequence    

Annotation

kegg
ID rcu:RCOM_0999340
description Protein COBRA precursor, putative
nr
ID XP_002519175.1
description Protein COBRA precursor, putative [Ricinus communis]
swissprot
ID Q8GZ17
description COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2
trembl
ID B9RZK6
description Protein COBRA, putative OS=Ricinus communis GN=RCOM_0999340 PE=4 SV=1
Gene Ontology
ID GO:0031225
description cobra-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24307: 73967-77325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_150 0.0 - - Protein COBRA precursor, putative [Ricinus communis]
2 Hb_000805_040 0.1225625981 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_004586_130 0.1363279618 - - conserved hypothetical protein [Ricinus communis]
4 Hb_094437_050 0.1381335199 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
5 Hb_000594_110 0.1405005895 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
6 Hb_000680_180 0.1445947628 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
7 Hb_000373_250 0.1469193895 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
8 Hb_007120_010 0.1481354056 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
9 Hb_000009_200 0.1538640073 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
10 Hb_002122_030 0.1547152707 - - -
11 Hb_001019_020 0.1557723294 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002007_070 0.1567012478 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
13 Hb_001989_060 0.1568676818 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
14 Hb_011930_120 0.1574334938 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
15 Hb_000451_040 0.1589546704 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000340_560 0.1590191814 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002498_250 0.1591319252 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_001579_070 0.1607424666 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
19 Hb_001863_270 0.1608418613 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
20 Hb_002936_030 0.1612660504 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_150 Hb_002311_150 Hb_000805_040 Hb_000805_040 Hb_002311_150--Hb_000805_040 Hb_004586_130 Hb_004586_130 Hb_002311_150--Hb_004586_130 Hb_094437_050 Hb_094437_050 Hb_002311_150--Hb_094437_050 Hb_000594_110 Hb_000594_110 Hb_002311_150--Hb_000594_110 Hb_000680_180 Hb_000680_180 Hb_002311_150--Hb_000680_180 Hb_000373_250 Hb_000373_250 Hb_002311_150--Hb_000373_250 Hb_001863_270 Hb_001863_270 Hb_000805_040--Hb_001863_270 Hb_011360_090 Hb_011360_090 Hb_000805_040--Hb_011360_090 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000805_040--Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_000892_030 Hb_000892_030 Hb_094437_050--Hb_000892_030 Hb_005725_280 Hb_005725_280 Hb_094437_050--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_094437_050--Hb_002400_040 Hb_000047_010 Hb_000047_010 Hb_094437_050--Hb_000047_010 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_000680_180--Hb_011930_120 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000680_180--Hb_000283_100 Hb_000680_180--Hb_001989_060 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_000373_250--Hb_007120_010 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4898 113.603 86.1383 63.8535 6.93094 3.12621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03222 2.57067 7.08702 6.63706 11.4264

CAGE analysis