Hb_002311_160

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig2311: 77957-81656
Sequence    

Annotation

kegg
ID rcu:RCOM_0999330
description sensor histidine kinase, putative
nr
ID XP_002519174.1
description sensor histidine kinase, putative [Ricinus communis]
swissprot
ID Q9ZWJ9
description Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
trembl
ID B9RZK5
description Sensor histidine kinase, putative OS=Ricinus communis GN=RCOM_0999330 PE=4 SV=1
Gene Ontology
ID GO:0003677
description sensor histidine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_160 0.0 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
2 Hb_001660_080 0.0991434523 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
3 Hb_002400_020 0.1238130772 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
4 Hb_000172_410 0.1265667451 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_006615_060 0.1280267467 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005381_010 0.1338102637 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
7 Hb_164146_020 0.1372789429 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_002374_200 0.1410268345 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
9 Hb_077694_010 0.1445125921 - - uncharacterized protein LOC100305624 [Glycine max]
10 Hb_000035_140 0.1493014179 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
11 Hb_120011_010 0.1499170598 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_121540_010 0.1513160779 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
13 Hb_000256_180 0.1525857498 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
14 Hb_001310_010 0.1532788366 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
15 Hb_004612_020 0.1547518763 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
16 Hb_086614_010 0.1555217221 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
17 Hb_000836_420 0.156269105 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000069_530 0.1567788926 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
19 Hb_004837_200 0.1614221069 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
20 Hb_002301_340 0.1627457094 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]

Gene co-expression network

sample Hb_002311_160 Hb_002311_160 Hb_001660_080 Hb_001660_080 Hb_002311_160--Hb_001660_080 Hb_002400_020 Hb_002400_020 Hb_002311_160--Hb_002400_020 Hb_000172_410 Hb_000172_410 Hb_002311_160--Hb_000172_410 Hb_006615_060 Hb_006615_060 Hb_002311_160--Hb_006615_060 Hb_005381_010 Hb_005381_010 Hb_002311_160--Hb_005381_010 Hb_164146_020 Hb_164146_020 Hb_002311_160--Hb_164146_020 Hb_001660_080--Hb_005381_010 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_121540_010 Hb_121540_010 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060 Hb_002400_020--Hb_000172_410 Hb_002374_200 Hb_002374_200 Hb_002400_020--Hb_002374_200 Hb_002400_020--Hb_001660_080 Hb_002400_020--Hb_121540_010 Hb_002400_020--Hb_005381_010 Hb_003078_070 Hb_003078_070 Hb_000172_410--Hb_003078_070 Hb_001369_670 Hb_001369_670 Hb_000172_410--Hb_001369_670 Hb_000172_410--Hb_121540_010 Hb_004109_240 Hb_004109_240 Hb_000172_410--Hb_004109_240 Hb_000172_410--Hb_001660_080 Hb_006615_060--Hb_164146_020 Hb_001153_250 Hb_001153_250 Hb_006615_060--Hb_001153_250 Hb_006615_060--Hb_005381_010 Hb_074672_010 Hb_074672_010 Hb_006615_060--Hb_074672_010 Hb_077694_010 Hb_077694_010 Hb_006615_060--Hb_077694_010 Hb_120011_010 Hb_120011_010 Hb_006615_060--Hb_120011_010 Hb_000069_530 Hb_000069_530 Hb_005381_010--Hb_000069_530 Hb_005381_010--Hb_121540_010 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_005381_010--Hb_077694_010 Hb_001310_010 Hb_001310_010 Hb_164146_020--Hb_001310_010 Hb_008202_020 Hb_008202_020 Hb_164146_020--Hb_008202_020 Hb_164146_020--Hb_120011_010 Hb_086614_010 Hb_086614_010 Hb_164146_020--Hb_086614_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.835264 1.04105 0.220739 0.0134505 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0157531 0.0247925 0 0.014757 0.184867

CAGE analysis