Hb_002311_180

Information

Type -
Description -
Location Contig2311: 89623-91985
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00300g
description POPTRDRAFT_833345; drought-responsive family protein
nr
ID XP_006380214.1
description drought-responsive family protein [Populus trichocarpa]
swissprot
ID Q8VXU6
description Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1
trembl
ID B9HX91
description Drought-responsive family protein OS=Populus trichocarpa GN=POPTR_0010s00300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24310: 89566-91976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_180 0.0 - - drought-responsive family protein [Populus trichocarpa]
2 Hb_005730_120 0.0681487845 - - PREDICTED: protein WHI4 [Jatropha curcas]
3 Hb_005271_220 0.0695577463 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
4 Hb_007416_300 0.074421852 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
5 Hb_002872_030 0.0763612666 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
6 Hb_007885_060 0.0801176778 - - replication factor C 40 kDa family protein [Populus trichocarpa]
7 Hb_021576_100 0.0801203771 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
8 Hb_004453_130 0.0820052908 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
9 Hb_000308_030 0.0830428195 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
10 Hb_008511_120 0.0840349949 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
11 Hb_022132_050 0.0847308927 - - GTP binding protein, putative [Ricinus communis]
12 Hb_000649_230 0.0857549948 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
13 Hb_002245_030 0.0864816 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_033834_030 0.0864971232 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
15 Hb_003893_030 0.0880162097 - - Protein yrdA, putative [Ricinus communis]
16 Hb_005288_190 0.0881951429 - - PREDICTED: exportin-4 [Jatropha curcas]
17 Hb_000521_320 0.0882812312 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
18 Hb_073973_130 0.0884676803 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
19 Hb_000566_200 0.088735943 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
20 Hb_000005_220 0.089382716 - - DNA ligase 1, partial [Glycine soja]

Gene co-expression network

sample Hb_002311_180 Hb_002311_180 Hb_005730_120 Hb_005730_120 Hb_002311_180--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002311_180--Hb_005271_220 Hb_007416_300 Hb_007416_300 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_007885_060 Hb_007885_060 Hb_002311_180--Hb_007885_060 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_005271_220--Hb_002303_070 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_010381_090 Hb_010381_090 Hb_007416_300--Hb_010381_090 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_007416_300--Hb_002872_030 Hb_003549_150 Hb_003549_150 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_027428_010 Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_002872_030--Hb_010381_090 Hb_002872_030--Hb_008453_140 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_002820_050 Hb_002820_050 Hb_007885_060--Hb_002820_050 Hb_000181_090 Hb_000181_090 Hb_007885_060--Hb_000181_090 Hb_007885_060--Hb_004453_130 Hb_002299_030 Hb_002299_030 Hb_007885_060--Hb_002299_030 Hb_007533_010 Hb_007533_010 Hb_007885_060--Hb_007533_010 Hb_142368_010 Hb_142368_010 Hb_021576_100--Hb_142368_010 Hb_000308_030 Hb_000308_030 Hb_021576_100--Hb_000308_030 Hb_005337_090 Hb_005337_090 Hb_021576_100--Hb_005337_090 Hb_021576_100--Hb_073973_130 Hb_000005_220 Hb_000005_220 Hb_021576_100--Hb_000005_220 Hb_079526_030 Hb_079526_030 Hb_021576_100--Hb_079526_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.1699 61.1057 83.1989 63.7882 74.4868 75.5654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.783 70.9733 47.9021 44.0743 37.2119

CAGE analysis