Hb_002311_230

Information

Type -
Description -
Location Contig2311: 120480-121989
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_230 0.0 - - -
2 Hb_005962_010 0.149546504 - - -
3 Hb_000483_180 0.157935223 - - -
4 Hb_119886_040 0.1659074906 - - -
5 Hb_007044_010 0.170145015 - - -
6 Hb_008556_020 0.1780418776 - - -
7 Hb_011639_010 0.1786207432 - - -
8 Hb_011639_150 0.1953417585 - - -
9 Hb_001522_010 0.202397614 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
10 Hb_000078_170 0.203161629 - - -
11 Hb_000024_070 0.2042577959 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
12 Hb_011798_040 0.2054515498 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
13 Hb_093245_010 0.2137118591 - - -
14 Hb_002188_090 0.2149019542 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
15 Hb_002084_040 0.2239897251 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
16 Hb_000201_040 0.2272234124 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
17 Hb_008616_030 0.2279274285 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
18 Hb_000317_150 0.2357609043 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
19 Hb_030627_040 0.2357899071 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
20 Hb_000770_030 0.2364496863 - - -

Gene co-expression network

sample Hb_002311_230 Hb_002311_230 Hb_005962_010 Hb_005962_010 Hb_002311_230--Hb_005962_010 Hb_000483_180 Hb_000483_180 Hb_002311_230--Hb_000483_180 Hb_119886_040 Hb_119886_040 Hb_002311_230--Hb_119886_040 Hb_007044_010 Hb_007044_010 Hb_002311_230--Hb_007044_010 Hb_008556_020 Hb_008556_020 Hb_002311_230--Hb_008556_020 Hb_011639_010 Hb_011639_010 Hb_002311_230--Hb_011639_010 Hb_000078_170 Hb_000078_170 Hb_005962_010--Hb_000078_170 Hb_005962_010--Hb_008556_020 Hb_011639_150 Hb_011639_150 Hb_005962_010--Hb_011639_150 Hb_001766_040 Hb_001766_040 Hb_005962_010--Hb_001766_040 Hb_005962_010--Hb_119886_040 Hb_000483_180--Hb_119886_040 Hb_009558_040 Hb_009558_040 Hb_000483_180--Hb_009558_040 Hb_000488_010 Hb_000488_010 Hb_000483_180--Hb_000488_010 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360 Hb_119886_040--Hb_008556_020 Hb_007223_010 Hb_007223_010 Hb_119886_040--Hb_007223_010 Hb_119886_040--Hb_011639_010 Hb_007044_010--Hb_011639_010 Hb_008616_030 Hb_008616_030 Hb_007044_010--Hb_008616_030 Hb_004631_160 Hb_004631_160 Hb_007044_010--Hb_004631_160 Hb_001522_010 Hb_001522_010 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010 Hb_008556_020--Hb_000078_170 Hb_008556_020--Hb_011639_150 Hb_008556_020--Hb_007044_010 Hb_011639_010--Hb_008616_030 Hb_011639_010--Hb_004631_160 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_011639_010--Hb_001522_010 Hb_011639_010--Hb_000483_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5523 1.5874 0.267882 0.0270412 2.80659 1.1418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144821 0.0569319 0.102466 0.346318 1.13659

CAGE analysis