Hb_002311_240

Information

Type -
Description -
Location Contig2311: 122466-129512
Sequence    

Annotation

kegg
ID rcu:RCOM_0683130
description Major allergen Pru ar, putative
nr
ID KDP27857.1
description hypothetical protein JCGZ_18937 [Jatropha curcas]
swissprot
ID O24248
description Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1
trembl
ID F6H6U6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01570 PE=4 SV=1
Gene Ontology
ID GO:0006952
description pathogenesis-related protein sth-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24314: 128804-129597
cDNA
(Sanger)
(ID:Location)		 011_J08.ab1: 128804-129597 , 042_E17.ab1: 128804-129597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_240 0.0 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
2 Hb_010647_010 0.1004525817 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
3 Hb_000019_220 0.1160796834 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
4 Hb_001250_140 0.1190749442 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
5 Hb_003057_080 0.1234793845 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
6 Hb_005000_310 0.1471615502 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
7 Hb_000347_550 0.1560904842 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
8 Hb_000045_230 0.1593291529 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
9 Hb_000352_080 0.167104367 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
10 Hb_058620_010 0.1692536944 - - cytochrome P450, putative [Ricinus communis]
11 Hb_002818_080 0.1714310777 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
12 Hb_001699_240 0.1737736509 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_012506_080 0.1771692725 - - amino acid transporter, putative [Ricinus communis]
14 Hb_002805_230 0.1807103512 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
15 Hb_001366_250 0.1812514732 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
16 Hb_003538_020 0.1821007609 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_003141_020 0.1833514065 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
18 Hb_148435_010 0.1853625259 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_001134_040 0.1864513667 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
20 Hb_000300_450 0.1876403997 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_002311_240 Hb_002311_240 Hb_010647_010 Hb_010647_010 Hb_002311_240--Hb_010647_010 Hb_000019_220 Hb_000019_220 Hb_002311_240--Hb_000019_220 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_003057_080 Hb_003057_080 Hb_002311_240--Hb_003057_080 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_010647_010--Hb_000019_220 Hb_012707_050 Hb_012707_050 Hb_010647_010--Hb_012707_050 Hb_010647_010--Hb_001250_140 Hb_073171_020 Hb_073171_020 Hb_010647_010--Hb_073171_020 Hb_000213_130 Hb_000213_130 Hb_010647_010--Hb_000213_130 Hb_000045_230 Hb_000045_230 Hb_000019_220--Hb_000045_230 Hb_000019_220--Hb_005000_310 Hb_000019_220--Hb_003057_080 Hb_002818_080 Hb_002818_080 Hb_000019_220--Hb_002818_080 Hb_058620_010 Hb_058620_010 Hb_001250_140--Hb_058620_010 Hb_000352_080 Hb_000352_080 Hb_001250_140--Hb_000352_080 Hb_012506_080 Hb_012506_080 Hb_001250_140--Hb_012506_080 Hb_135392_010 Hb_135392_010 Hb_001250_140--Hb_135392_010 Hb_001134_040 Hb_001134_040 Hb_001250_140--Hb_001134_040 Hb_003057_080--Hb_000045_230 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_000614_180 Hb_000614_180 Hb_005000_310--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_005000_310--Hb_001366_250 Hb_005000_310--Hb_000045_230 Hb_005000_310--Hb_003057_080 Hb_004195_240 Hb_004195_240 Hb_000347_550--Hb_004195_240 Hb_000300_450 Hb_000300_450 Hb_000347_550--Hb_000300_450 Hb_148435_010 Hb_148435_010 Hb_000347_550--Hb_148435_010 Hb_148914_010 Hb_148914_010 Hb_000347_550--Hb_148914_010 Hb_010407_120 Hb_010407_120 Hb_000347_550--Hb_010407_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0904365 0.109219 0.174898 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130841 0.308801 0 5.70406 0.107486

CAGE analysis