Hb_002311_250

Information

Type -
Description -
Location Contig2311: 129999-131798
Sequence    

Annotation

kegg
ID rcu:RCOM_0683010
description hypothetical protein
nr
ID KDP27856.1
description hypothetical protein JCGZ_18936 [Jatropha curcas]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID A0A067JV62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18936 PE=4 SV=1
Gene Ontology
ID GO:0046872
description proline-rich protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24314: 128804-129597
cDNA
(Sanger)
(ID:Location)		 011_J08.ab1: 128804-129597 , 025_L07.ab1: 130596-131355 , 042_E17.ab1: 128804-129597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_250 0.0 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
2 Hb_011457_160 0.1369113999 - - PREDICTED: BI1-like protein [Jatropha curcas]
3 Hb_001946_360 0.1465862428 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
4 Hb_011344_010 0.1506232843 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
5 Hb_002374_440 0.1541750832 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002239_040 0.1611220352 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
7 Hb_009680_030 0.166252984 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
8 Hb_003327_030 0.1681205806 - - Hsc70-interacting protein, putative [Ricinus communis]
9 Hb_001341_040 0.1689167571 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
10 Hb_003768_040 0.1729708733 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000008_230 0.180171414 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
12 Hb_000317_080 0.1841026903 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
13 Hb_003656_110 0.1850268572 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
14 Hb_003097_190 0.1852892433 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
15 Hb_097433_010 0.1870907273 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
16 Hb_004645_040 0.1874951892 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
17 Hb_000406_040 0.1886827532 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
18 Hb_000152_560 0.1891004279 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
19 Hb_006846_090 0.1926924988 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
20 Hb_002344_090 0.1936355607 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_250 Hb_002311_250 Hb_011457_160 Hb_011457_160 Hb_002311_250--Hb_011457_160 Hb_001946_360 Hb_001946_360 Hb_002311_250--Hb_001946_360 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002374_440 Hb_002374_440 Hb_002311_250--Hb_002374_440 Hb_002239_040 Hb_002239_040 Hb_002311_250--Hb_002239_040 Hb_009680_030 Hb_009680_030 Hb_002311_250--Hb_009680_030 Hb_003656_110 Hb_003656_110 Hb_011457_160--Hb_003656_110 Hb_000028_040 Hb_000028_040 Hb_011457_160--Hb_000028_040 Hb_011457_160--Hb_011344_010 Hb_004645_040 Hb_004645_040 Hb_011457_160--Hb_004645_040 Hb_011457_160--Hb_002239_040 Hb_005228_120 Hb_005228_120 Hb_001946_360--Hb_005228_120 Hb_000317_080 Hb_000317_080 Hb_001946_360--Hb_000317_080 Hb_000395_140 Hb_000395_140 Hb_001946_360--Hb_000395_140 Hb_130177_010 Hb_130177_010 Hb_001946_360--Hb_130177_010 Hb_001341_040 Hb_001341_040 Hb_001946_360--Hb_001341_040 Hb_001427_170 Hb_001427_170 Hb_011344_010--Hb_001427_170 Hb_011344_010--Hb_001341_040 Hb_001040_170 Hb_001040_170 Hb_011344_010--Hb_001040_170 Hb_002997_100 Hb_002997_100 Hb_011344_010--Hb_002997_100 Hb_001057_010 Hb_001057_010 Hb_011344_010--Hb_001057_010 Hb_000733_060 Hb_000733_060 Hb_011344_010--Hb_000733_060 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_012340_020 Hb_012340_020 Hb_002374_440--Hb_012340_020 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_000406_040 Hb_000406_040 Hb_002239_040--Hb_000406_040 Hb_002239_040--Hb_003656_110 Hb_003097_190 Hb_003097_190 Hb_002239_040--Hb_003097_190 Hb_006816_170 Hb_006816_170 Hb_002239_040--Hb_006816_170 Hb_000152_560 Hb_000152_560 Hb_002239_040--Hb_000152_560 Hb_006846_090 Hb_006846_090 Hb_009680_030--Hb_006846_090 Hb_002983_020 Hb_002983_020 Hb_009680_030--Hb_002983_020 Hb_019153_040 Hb_019153_040 Hb_009680_030--Hb_019153_040 Hb_010931_110 Hb_010931_110 Hb_009680_030--Hb_010931_110 Hb_000300_530 Hb_000300_530 Hb_009680_030--Hb_000300_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55457 5.41014 1.65773 2.51528 45.9787 9.79422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76357 6.43442 12.3344 3.90735 2.13173

CAGE analysis